C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine palmitoyltransferase, small subunit B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043461 Sptssb 10090 - 3:69819538-69859896 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000051239 Sptssb-201 69819538-69859896 protein_coding
  ENSMUST00000171529 Sptssb-202 69819538-69859896 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000051239ENSMUST00000171529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000051239 2.459±0.31 0.387±0.21 161.027±62.07 0.076±0.01 0.203±0.00 31.034±13.24 0.035±0.01 3.513±0.48 0.173±0.08 7.715±6.88 0.139±0.13 0.067±0.04 0.059±0.00
ENSMUST00000171529 N/A N/A 37.436±7.15 0.196±0.00 N/A 4.632±1.04 N/A 0.603±0.21 N/A N/A 0.003±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K1 CIL_0004K1_0003 CGP 3:69721985-69859896
CIL_00049N CIL_00049N_0003 CGP 3:69819538-70028708

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004758 ISS serine C-palmitoyltransferase activity
GO:0005515 IEA protein binding
GO:0006665 IEA sphingolipid metabolic process
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0017059 ISS serine C-palmitoyltransferase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091658 sptssb serine palmitoyltransferase, small subunit B protein_coding Danio_rerio
ENSG00000196542 SPTSSB serine palmitoyltransferase, small subunit B protein_coding Homo_sapiens

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