C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine palmitoyltransferase, small subunit B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051239 Sptssb-201 ENSMUSG00000043461 10090 - 3:69819538-69859896 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000051239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000051239 2.459±0.31 0.387±0.21 161.027±62.07 0.076±0.01 0.203±0.00 31.034±13.24 0.035±0.01 3.513±0.48 0.173±0.08 7.715±6.88 0.139±0.13 0.067±0.04 0.059±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K1 CIL_0004K1_0003 CGP 3:69721985-69859896
CIL_00049N CIL_00049N_0003 CGP 3:69819538-70028708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004758 ISS serine C-palmitoyltransferase activity
GO:0005515 IEA protein binding
GO:0006665 IEA sphingolipid metabolic process
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0017059 ISS serine C-palmitoyltransferase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000359175 SPTSSB-001 protein_coding Homo_sapiens 0 344
ENST00000497137 SPTSSB-003 protein_coding Homo_sapiens 0 274
ENST00000620149 SPTSSB-202 protein_coding Homo_sapiens 0 244

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