C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: serine palmitoyltransferase, small subunit B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000196542 SPTSSB 9606 - 3:161344792-161372880 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359175 SPTSSB-001 161344792-161372880 protein_coding
  ENST00000497137 SPTSSB-003 161345775-161371501 protein_coding
  ENST00000497374 SPTSSB-002 161359299-161371517 retained_intron
  ENST00000617024 SPTSSB-201 161371530-161372821 protein_coding
  ENST00000620149 SPTSSB-202 161346093-161346323 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000359175ENST00000497137ENST00000497374ENST00000617024
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000359175 0.014±0.00 0.270±0.00 0.195±0.00 3.001±1.11 0.162±0.04 0.081±0.00 0.045±0.04 0.399±0.00 1.096±1.07 0.047±0.00 0.109±0.01 0.051±0.04 0.029±0.00
ENST00000497137 N/A 0.122±0.00 N/A N/A 0.254±0.00 N/A N/A 0.600±0.00 1.770±0.00 0.200±0.00 0.297±0.00 0.222±0.00 0.041±0.00
ENST00000497374 N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A
ENST00000617024 0.036±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.504±0.00 N/A 0.162±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K1 CIL_0004K1_0002 CGP 3:161104696-161372880
CIL_00049N CIL_00049N_0002 CGP 3:161344792-161503942

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004758 IDA serine C-palmitoyltransferase activity
GO:0005515 IPI protein binding
GO:0016021 IEA integral component of membrane
GO:0017059 IDA serine C-palmitoyltransferase complex
GO:0030148 TAS sphingolipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091658 sptssb serine palmitoyltransferase, small subunit B protein_coding Danio_rerio
ENSMUSG00000043461 Sptssb serine palmitoyltransferase, small subunit B protein_coding Mus_musculus

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