C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: HscB iron-sulfur cluster co-chaperone homolog (E. coli)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043510 Hscb 10090 - 5:110829070-110839777 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056937 Hscb-001 110829070-110839777 protein_coding
  ENSMUST00000122921 Hscb-002 110829081-110834895 retained_intron
  ENSMUST00000144850 Hscb-003 110829080-110836320 nonsense_mediated_decay
  ENSMUST00000145318 Hscb-004 110829080-110839575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056937ENSMUST00000144850ENSMUST00000145318
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056937 6.790±0.54 5.557±0.50 13.010±0.49 2.092±0.95 6.651±2.91 6.659±3.53 4.909±1.92 11.759±1.34 11.209±10.28 7.078±1.48 5.919±0.99 7.836±2.80 7.392±3.68 4.475±1.92
ENSMUST00000144850 N/A N/A N/A 4.664±0.00 N/A N/A N/A N/A N/A N/A 1.109±0.00 8.756±1.84 11.366±5.44 4.565±0.00
ENSMUST00000145318 N/A N/A N/A 2.215±0.00 N/A N/A N/A N/A N/A N/A N/A 4.901±0.00 4.050±0.76 1.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005813 IEA centrosome
GO:0005886 IEA plasma membrane
GO:0006457 IEA protein folding
GO:0016226 IEA iron-sulfur cluster assembly
GO:0046872 IEA metal ion binding
GO:0051087 IEA chaperone binding
GO:0051259 IEA protein oligomerization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075416 HSCB HscB mitochondrial iron-sulfur cluster co-chaperone protein_coding Danio_rerio
ENSG00000100209 HSCB HscB mitochondrial iron-sulfur cluster co-chaperone protein_coding Homo_sapiens

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