C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HscB iron-sulfur cluster co-chaperone homolog (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056937 Hscb-001 ENSMUSG00000043510 10090 - 5:110829070-110839777 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056937 6.790±0.54 5.557±0.50 13.010±0.49 2.092±0.95 6.651±2.91 6.659±3.53 4.909±1.92 11.759±1.34 11.209±10.28 7.078±1.48 5.919±0.99 7.836±2.80 7.392±3.68 4.475±1.92

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771
CIL_0007W4 CIL_0007W4_0002 VISTA 5:110754482-111355796

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005813 IEA centrosome
GO:0005886 IEA plasma membrane
GO:0006457 IEA protein folding
GO:0016226 IEA iron-sulfur cluster assembly
GO:0046872 IEA metal ion binding
GO:0051087 IEA chaperone binding
GO:0051259 IEA protein oligomerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216027 HSCB-001 protein_coding Homo_sapiens 0 580
ENST00000398941 HSCB-003 protein_coding Homo_sapiens 2e-40 171
ENST00000420442 HSCB-007 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000450178 HSCB-002 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000483861 HSCB-005 processed_transcript Homo_sapiens 0 499
ENST00000495977 HSCB-006 processed_transcript Homo_sapiens 0 477

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