C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L7
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043716 Rpl7 10090 - 1:16101295-16104662 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058437 Rpl7-001 16101295-16104662 protein_coding
  ENSMUST00000125005 Rpl7-004 16102491-16104384 retained_intron
  ENSMUST00000140597 Rpl7-006 16101295-16102082 processed_transcript
  ENSMUST00000141217 Rpl7-002 16101306-16104402 retained_intron
  ENSMUST00000149566 Rpl7-003 16101780-16104227 protein_coding
  ENSMUST00000151017 Rpl7-005 16101528-16102848 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058437ENSMUST00000125005ENSMUST00000140597ENSMUST00000149566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058437 103.218±50.10 7.914±0.95 443.342±22.61 125.589±70.65 48.451±12.84 52.905±15.43 12.554±0.00 42.668±12.68 283.569±216.79 76.090±0.00 85.849±17.78 69.003±13.51 249.326±187.13 15.372±8.95
ENSMUST00000125005 N/A 31.038±6.97 N/A N/A 34.061±0.72 38.693±9.47 N/A N/A 25.648±0.00 N/A N/A 108.386±27.59 N/A N/A
ENSMUST00000140597 N/A N/A N/A 50.430±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149566 93.496±64.54 15.628±1.56 282.205±31.73 137.887±46.22 147.791±71.47 90.734±7.15 56.224±7.32 105.660±21.01 173.642±142.33 99.590±17.11 41.558±7.67 229.311±144.04 261.609±169.07 40.324±5.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011X CIL_00011X_0002 CGP 1:16065979-16104662
CIL_0005C3 CIL_0005C3_0003 CGP 1:16101295-16133734

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 ISO DNA binding
GO:0003729 ISO mRNA binding
GO:0003735 IC structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IC translation
GO:0016020 IEA membrane
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0042803 ISO protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007320 rpl7 ribosomal protein L7 protein_coding Danio_rerio
ENSG00000147604 RPL7 ribosomal protein L7 protein_coding Homo_sapiens

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