C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141116 Taf10-001 ENSMUSG00000043866 10090 - 7:105739393-105744361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000141116
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000141116 40.803±9.62 31.281±4.14 19.366±0.00 9.990±3.86 23.795±12.10 23.447±4.25 7.511±2.85 18.971±0.75 10.194±1.49 23.505±7.40 5.080±0.73 36.587±11.56 17.562±7.26 9.430±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HZ CIL_0001HZ_0002 CGP 7:105732207-105742925
CIL_0003X8 CIL_0003X8_0002 CGP 7:105736592-105744361
CIL_0003WX CIL_0003WX_0002 CGP 7:105739393-105752207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 IMP G1/S transition of mitotic cell cycle
GO:0001889 IMP liver development
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0005669 TAS transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006915 IMP apoptotic process
GO:0010468 IMP regulation of gene expression
GO:0035264 IMP multicellular organism growth
GO:0043623 IMP cellular protein complex assembly
GO:0051101 IMP regulation of DNA binding
GO:0070365 IMP hepatocyte differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099364 taf10-001 protein_coding Danio_rerio 0 235
ENSDART00000143397 taf10-002 protein_coding Danio_rerio 0 235
ENST00000299421 ILK-001 protein_coding Homo_sapiens 0 516
ENST00000299424 TAF10-001 protein_coding Homo_sapiens 0 1042
ENST00000396751 ILK-003 protein_coding Homo_sapiens 0 516
ENST00000420936 ILK-002 protein_coding Homo_sapiens 0 448
ENST00000524735 ILK-012 processed_transcript Homo_sapiens 0 268
ENST00000526114 ILK-009 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000526318 ILK-013 protein_coding Homo_sapiens 0 291
ENST00000526711 ILK-006 nonsense_mediated_decay Homo_sapiens 0 523
ENST00000527121 ILK-008 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000527248 TAF10-004 protein_coding Homo_sapiens 0 544
ENST00000528784 ILK-011 retained_intron Homo_sapiens 2e-40 171
ENST00000528995 ILK-005 protein_coding Homo_sapiens 0 508
ENST00000530016 ILK-007 retained_intron Homo_sapiens 0 399
ENST00000531760 TAF10-005 processed_transcript Homo_sapiens 0 484
ENST00000532063 ILK-201 protein_coding Homo_sapiens 0 523
ENST00000532344 TAF10-003 retained_intron Homo_sapiens 0.00000000000001 84
ENST00000534706 ILK-014 processed_transcript Homo_sapiens 0 412
ENST00000537806 ILK-004 protein_coding Homo_sapiens 0 451
ENST00000616342 TAF10-002 retained_intron Homo_sapiens 0 2455

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