C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000131683 Taf10-003 ENSMUSG00000043866 10090 - 7:105742896-105744082 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000131683
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000131683 111.695±5.08 67.632±20.12 102.126±7.54 73.325±11.71 45.366±5.04 125.243±20.47 92.650±44.36 56.000±2.69 29.903±2.95 129.680±10.84 156.806±63.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HZ CIL_0001HZ_0002 CGP 7:105732207-105742925
CIL_0003X8 CIL_0003X8_0002 CGP 7:105736592-105744361
CIL_0003WX CIL_0003WX_0002 CGP 7:105739393-105752207

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099364 taf10-001 protein_coding Danio_rerio 0 235
ENSDART00000143397 taf10-002 protein_coding Danio_rerio 0 235
ENST00000299424 TAF10-001 protein_coding Homo_sapiens 0 732
ENST00000526318 ILK-013 protein_coding Homo_sapiens 0.00004 53
ENST00000526711 ILK-006 nonsense_mediated_decay Homo_sapiens 0.000002 58
ENST00000527248 TAF10-004 protein_coding Homo_sapiens 0 544
ENST00000531760 TAF10-005 processed_transcript Homo_sapiens 0 484
ENST00000532063 ILK-201 protein_coding Homo_sapiens 0.000002 58
ENST00000532344 TAF10-003 retained_intron Homo_sapiens 0.00000000000001 84
ENST00000616342 TAF10-002 retained_intron Homo_sapiens 0 545

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