C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cysteine-serine-rich nuclear protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000112394 Csrnp3-004 ENSMUSG00000044647 10090 + 2:65948949-66023053 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainKidneyLiverOvaryPlacentaENSMUST00000112394
Transcript ID Adipose Adrenal Brain Kidney Liver Ovary Placenta
ENSMUST00000112394 0.954±0.19 0.107±0.10 21.630±0.00 0.306±0.09 0.050±0.00 1.305±0.30 0.065±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CJ CIL_0006CJ_0002 CGP 2:65620857-66031546
CIL_00087V CIL_00087V_0002 VISTA 2:65692128-66294633
CIL_0003S2 CIL_0003S2_0003 CGP 2:65845767-66124994

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0010923 ISS negative regulation of phosphatase activity
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314499 CSRNP3-201 protein_coding Homo_sapiens 0 1964
ENST00000342316 CSRNP3-001 protein_coding Homo_sapiens 0 1964
ENST00000409420 CSRNP3-006 protein_coding Homo_sapiens 0 1964
ENST00000409664 CSRNP3-002 protein_coding Homo_sapiens 0 501
ENST00000421875 CSRNP3-003 protein_coding Homo_sapiens 0 1441

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