C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 38, member 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044712 Slc38a6 10090 + 12:73286779-73354049 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000058139 Slc38a6-002 73286857-73327878 nonsense_mediated_decay
  ENSMUST00000101313 Slc38a6-004 73287060-73312182 protein_coding
  ENSMUST00000122920 Slc38a6-006 73286908-73319005 protein_coding
  ENSMUST00000126488 Slc38a6-003 73286790-73319016 protein_coding
  ENSMUST00000134247 Slc38a6-007 73318629-73339989 retained_intron
  ENSMUST00000140523 Slc38a6-001 73286779-73354049 protein_coding
  ENSMUST00000150996 Slc38a6-008 73344367-73351865 retained_intron
  ENSMUST00000153941 Slc38a6-005 73286895-73314520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058139ENSMUST00000101313ENSMUST00000126488ENSMUST00000140523ENSMUST00000153941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.552±0.00 N/A 4.130±0.31
ENSMUST00000101313 N/A N/A N/A 10.114±0.00 N/A N/A N/A N/A N/A N/A N/A 7.409±0.00 44.940±3.53 N/A
ENSMUST00000126488 N/A 4.779±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140523 4.405±0.52 1.441±0.12 4.419±0.02 1.233±0.00 3.519±0.57 N/A 1.537±0.07 3.200±0.22 1.671±0.27 3.833±0.29 N/A 2.683±1.05 N/A 2.647±0.94
ENSMUST00000153941 13.224±2.05 6.051±0.68 6.005±1.94 20.923±22.87 12.982±3.03 18.290±7.36 7.567±2.24 9.324±1.68 10.546±6.61 14.945±1.60 8.994±4.55 10.417±6.74 57.874±46.18 6.220±2.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0002 VISTA 12:72750612-73352572
CIL_00035S CIL_00035S_0003 CGP 12:73280410-73354049

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054312 slc38a6 solute carrier family 38, member 6 protein_coding Danio_rerio
ENSG00000139974 SLC38A6 solute carrier family 38, member 6 protein_coding Homo_sapiens

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