C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000140523 Slc38a6-001 ENSMUSG00000044712 10090 + 12:73286779-73354049 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungOvaryTestisENSMUST00000140523
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Ovary Testis
ENSMUST00000140523 4.405±0.52 1.441±0.12 4.419±0.02 1.233±0.00 3.519±0.57 1.537±0.07 3.200±0.22 1.671±0.27 3.833±0.29 2.683±1.05 2.647±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0002 VISTA 12:72750612-73352572
CIL_00035S CIL_00035S_0003 CGP 12:73280410-73354049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267488 SLC38A6-001 protein_coding Homo_sapiens 0 1323
ENST00000354886 SLC38A6-201 protein_coding Homo_sapiens 0 1303
ENST00000451406 SLC38A6-003 protein_coding Homo_sapiens 0 1291
ENST00000491344 SLC38A6-004 nonsense_mediated_decay Homo_sapiens 0 843
ENST00000524402 SLC38A6-010 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000525585 SLC38A6-007 retained_intron Homo_sapiens 2e-34 150
ENST00000525723 SLC38A6-002 nonsense_mediated_decay Homo_sapiens 0 843
ENST00000526105 SLC38A6-011 protein_coding Homo_sapiens 0 442
ENST00000527591 SLC38A6-005 nonsense_mediated_decay Homo_sapiens 0 702
ENST00000528350 SLC38A6-012 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000529212 SLC38A6-014 protein_coding Homo_sapiens 0 590
ENST00000529345 SLC38A6-006 nonsense_mediated_decay Homo_sapiens 0 1221
ENST00000532148 SLC38A6-009 processed_transcript Homo_sapiens 0 259
ENST00000533744 SLC38A6-013 protein_coding Homo_sapiens 0 472
ENST00000534758 SLC38A6-008 protein_coding Homo_sapiens 2.00386e-43 180
ENST00000554072 SLC38A6-016 retained_intron Homo_sapiens 0 265
ENST00000554304 SLC38A6-019 processed_transcript Homo_sapiens 0 259

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