C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 38, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153941 Slc38a6-005 ENSMUSG00000044712 10090 + 12:73286895-73314520 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153941
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153941 13.224±2.05 6.051±0.68 6.005±1.94 20.923±22.87 12.982±3.03 18.290±7.36 7.567±2.24 9.324±1.68 10.546±6.61 14.945±1.60 8.994±4.55 10.417±6.74 57.874±46.18 6.220±2.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MW CIL_0008MW_0002 VISTA 12:72750612-73352572
CIL_00035S CIL_00035S_0003 CGP 12:73280410-73354049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267488 SLC38A6-001 protein_coding Homo_sapiens 0 315
ENST00000354886 SLC38A6-201 protein_coding Homo_sapiens 0 315
ENST00000451406 SLC38A6-003 protein_coding Homo_sapiens 0 303
ENST00000491344 SLC38A6-004 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000524402 SLC38A6-010 nonsense_mediated_decay Homo_sapiens 2.00386e-43 180
ENST00000525585 SLC38A6-007 retained_intron Homo_sapiens 2e-34 150
ENST00000525723 SLC38A6-002 nonsense_mediated_decay Homo_sapiens 3.00018e-42 178
ENST00000526105 SLC38A6-011 protein_coding Homo_sapiens 0 233
ENST00000527591 SLC38A6-005 nonsense_mediated_decay Homo_sapiens 1.99965e-42 178
ENST00000528350 SLC38A6-012 nonsense_mediated_decay Homo_sapiens 4e-34 148
ENST00000529345 SLC38A6-006 nonsense_mediated_decay Homo_sapiens 0 233
ENST00000532148 SLC38A6-009 processed_transcript Homo_sapiens 0 259
ENST00000533744 SLC38A6-013 protein_coding Homo_sapiens 5e-34 148
ENST00000554304 SLC38A6-019 processed_transcript Homo_sapiens 0 259

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