C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077876 Snx12-001 ENSMUSG00000046032 10090 - X:101211959-101222563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000077876
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000077876 4.781±0.88 8.894±2.36 3.624±0.38 3.286±1.11 2.434±0.17 5.838±1.21 3.813±1.81 3.082±0.48 3.589±0.25 10.079±2.50 0.800±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B5 CIL_0002B5_0002 CGP X:101079210-101222563
CIL_00009X CIL_00009X_0002 CGP X:101097786-101260873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0035091 IBA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276105 SNX12-002 protein_coding Homo_sapiens 0 785
ENST00000374274 SNX12-001 protein_coding Homo_sapiens 0 883
ENST00000465030 SNX12-003 processed_transcript Homo_sapiens 0 484
ENST00000483560 SNX12-005 processed_transcript Homo_sapiens 0 774
ENST00000490561 SNX12-004 processed_transcript Homo_sapiens 0 398
ENST00000622259 SNX12-201 protein_coding Homo_sapiens 0 904
ENST00000622277 SNX12-202 protein_coding Homo_sapiens 0 756

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