C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120389 Snx12-002 ENSMUSG00000046032 10090 - X:101211959-101222549 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120389
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120389 6.422±0.44 4.922±1.43 15.944±0.61 11.364±4.89 4.731±1.83 6.306±1.50 4.998±0.76 6.370±0.97 5.718±1.65 6.547±1.00 7.507±0.69 7.047±1.73 9.119±4.67 1.034±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B5 CIL_0002B5_0002 CGP X:101079210-101222563
CIL_00009X CIL_00009X_0002 CGP X:101097786-101260873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0035091 IBA phosphatidylinositol binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276105 SNX12-002 protein_coding Homo_sapiens 0 998
ENST00000374274 SNX12-001 protein_coding Homo_sapiens 0 1716
ENST00000465030 SNX12-003 processed_transcript Homo_sapiens 0 684
ENST00000483560 SNX12-005 processed_transcript Homo_sapiens 0 457
ENST00000490561 SNX12-004 processed_transcript Homo_sapiens 0 398
ENST00000622259 SNX12-201 protein_coding Homo_sapiens 0 893
ENST00000622277 SNX12-202 protein_coding Homo_sapiens 0 1587

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