C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000156473 Snx12-003 ENSMUSG00000046032 10090 - X:101097786-101222553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonOvaryPlacentaTestisENSMUST00000156473
Transcript ID Adrenal Brain Colon Ovary Placenta Testis
ENSMUST00000156473 4.293±2.38 2.561±0.00 1.897±0.00 4.029±1.59 6.919±2.72 0.641±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002B5 CIL_0002B5_0002 CGP X:101079210-101222563
CIL_00009X CIL_00009X_0002 CGP X:101097786-101260873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005768 IBA endosome
GO:0005769 IEA early endosome
GO:0006886 IBA intracellular protein transport
GO:0010629 IEA negative regulation of gene expression
GO:0010955 IEA negative regulation of protein processing
GO:0019899 IEA enzyme binding
GO:0030100 IEA regulation of endocytosis
GO:0035091 IBA phosphatidylinositol binding
GO:0042177 IEA negative regulation of protein catabolic process
GO:0051224 IEA negative regulation of protein transport
GO:0070062 IEA extracellular vesicular exosome
GO:2000642 IEA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000276105 SNX12-002 protein_coding Homo_sapiens 0 785
ENST00000374274 SNX12-001 protein_coding Homo_sapiens 0 883
ENST00000465030 SNX12-003 processed_transcript Homo_sapiens 0 484
ENST00000483560 SNX12-005 processed_transcript Homo_sapiens 0 457
ENST00000490561 SNX12-004 processed_transcript Homo_sapiens 0 398
ENST00000622259 SNX12-201 protein_coding Homo_sapiens 0 900
ENST00000622277 SNX12-202 protein_coding Homo_sapiens 0 756

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