C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen and calcium binding EGF domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046318 Ccbe1 10090 - 18:66045302-66302739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061103 Ccbe1-005 66056855-66291788 nonsense_mediated_decay
  ENSMUST00000130300 Ccbe1-001 66060967-66291838 protein_coding
  ENSMUST00000146610 Ccbe1-003 66045302-66291446 processed_transcript
  ENSMUST00000151343 Ccbe1-002 66269028-66302739 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061103ENSMUST00000130300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061103 0.208±0.09 6.589±1.62 0.138±0.00 0.215±0.12 0.574±0.36 0.260±0.13 0.617±0.08 0.516±0.16 0.492±0.24 0.805±0.22 0.172±0.09 18.725±7.80 0.347±0.10 0.927±0.49
ENSMUST00000130300 0.184±0.00 9.779±0.00 N/A N/A 0.666±0.39 0.603±0.10 N/A 0.800±0.00 0.510±0.15 1.467±0.27 0.077±0.00 N/A N/A 2.666±0.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P5 CIL_0001P5_0002 CGP 18:65980754-66302739
CIL_0007FI CIL_0007FI_0002 CGP 18:66045302-66465550

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001946 ISS lymphangiogenesis
GO:0002020 IEA protease binding
GO:0002040 ISS sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005518 ISO collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IEA extracellular space
GO:0010575 IEA positive regulation vascular endothelial growth factor production
GO:0010595 IMP positive regulation of endothelial cell migration
GO:0010954 IEA positive regulation of protein processing
GO:0031012 ISO extracellular matrix
GO:0045766 IDA positive regulation of angiogenesis
GO:0048845 ISS venous blood vessel morphogenesis
GO:1900748 IEA positive regulation of vascular endothelial growth factor signaling pathway
GO:1901492 IDA positive regulation of lymphangiogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060022 ccbe1 collagen and calcium binding EGF domains 1 protein_coding Danio_rerio
ENSG00000183287 CCBE1 collagen and calcium binding EGF domains 1 protein_coding Homo_sapiens

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