C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen and calcium binding EGF domains 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183287 CCBE1 9606 - 18:59430940-59697380 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000398179 CCBE1-201 59430940-59480240 protein_coding
  ENST00000439986 CCBE1-001 59430940-59697380 protein_coding
  ENST00000589116 CCBE1-002 59435146-59455212 retained_intron
  ENST00000589419 CCBE1-004 59448046-59666162 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398179ENST00000439986ENST00000589116ENST00000589419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398179 N/A N/A N/A 0.577±0.00 0.349±0.00 1.858±0.00 0.429±0.00 0.731±0.00 0.337±0.00 N/A 0.022±0.00 N/A 0.017±0.00 0.466±0.00
ENST00000439986 2.510±0.00 0.332±0.00 0.154±0.00 0.086±0.04 0.299±0.07 2.353±1.79 0.105±0.00 0.343±0.26 0.306±0.01 3.034±1.66 0.232±0.00 4.717±2.52 N/A 0.230±0.07
ENST00000589116 N/A N/A 0.715±0.00 0.303±0.00 N/A N/A 0.260±0.00 0.428±0.00 N/A N/A 0.547±0.00 N/A 0.010±0.00 N/A
ENST00000589419 N/A N/A 3.045±0.00 0.918±0.00 1.775±0.00 N/A N/A 3.868±0.00 N/A 8.869±0.00 N/A 7.895±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P5 CIL_0001P5_0001 CGP 18:59327823-59697380
CIL_0007FI CIL_0007FI_0001 CGP 18:59430940-59904306

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001946 ISS lymphangiogenesis
GO:0002020 IPI protease binding
GO:0002040 ISS sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005518 IDA collagen binding
GO:0005581 IEA collagen trimer
GO:0005615 IDA extracellular space
GO:0010575 IDA positive regulation vascular endothelial growth factor production
GO:0010595 IEA positive regulation of endothelial cell migration
GO:0010954 IDA positive regulation of protein processing
GO:0031012 IDA extracellular matrix
GO:0045766 IEA positive regulation of angiogenesis
GO:0048845 ISS venous blood vessel morphogenesis
GO:1900748 IDA positive regulation of vascular endothelial growth factor signaling pathway
GO:1901492 IEA positive regulation of lymphangiogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060022 ccbe1 collagen and calcium binding EGF domains 1 protein_coding Danio_rerio
ENSMUSG00000046318 Ccbe1 collagen and calcium binding EGF domains 1 protein_coding Mus_musculus

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