C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen and calcium binding EGF domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061103 Ccbe1-005 ENSMUSG00000046318 10090 - 18:66056855-66291788 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061103 0.208±0.09 6.589±1.62 0.138±0.00 0.215±0.12 0.574±0.36 0.260±0.13 0.617±0.08 0.516±0.16 0.492±0.24 0.805±0.22 0.172±0.09 18.725±7.80 0.347±0.10 0.927±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001P5 CIL_0001P5_0002 CGP 18:65980754-66302739
CIL_0007FI CIL_0007FI_0002 CGP 18:66045302-66465550

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001946 ISS lymphangiogenesis
GO:0002040 ISS sprouting angiogenesis
GO:0005509 IEA calcium ion binding
GO:0005518 ISO collagen binding
GO:0005581 IEA collagen trimer
GO:0010595 IMP positive regulation of endothelial cell migration
GO:0031012 ISO extracellular matrix
GO:0045766 IDA positive regulation of angiogenesis
GO:0048845 ISS venous blood vessel morphogenesis
GO:1901492 IDA positive regulation of lymphangiogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398179 CCBE1-201 protein_coding Homo_sapiens 0 1134
ENST00000439986 CCBE1-001 protein_coding Homo_sapiens 0 1404
ENST00000589116 CCBE1-002 retained_intron Homo_sapiens 0 765
ENST00000589419 CCBE1-004 protein_coding Homo_sapiens 0 555

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