C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: heterogeneous nuclear ribonucleoprotein A1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000046434 Hnrnpa1 10090 + 15:103240432-103244955 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036004 Hnrnpa1-201 103240432-103244955 protein_coding
  ENSMUST00000087351 Hnrnpa1-202 103240432-103244955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036004ENSMUST00000087351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036004 7.378±0.78 4.168±0.00 N/A 99.897±61.53 N/A N/A 13.617±3.99 N/A 45.781±26.01 7.576±0.00 11.140±0.00 34.086±7.93 44.782±4.62 5.925±0.51
ENSMUST00000087351 65.639±27.26 8.337±2.79 117.021±0.84 214.806±86.00 25.460±6.42 20.110±8.00 14.664±7.37 21.868±3.87 209.731±243.28 41.644±7.55 19.200±5.65 100.530±80.92 180.136±119.72 28.998±7.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TM CIL_0002TM_0003 CGP 15:103191544-103244955
CIL_0002TL CIL_0002TL_0003 CGP 15:103240432-103258403

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 ISO nucleoplasm
GO:0005681 ISS spliceosomal complex
GO:0005737 ISS cytoplasm
GO:0008380 IDA RNA splicing
GO:0019013 IEA viral nucleocapsid
GO:0030529 ISO ribonucleoprotein complex
GO:0051028 IEA mRNA transport
GO:0051168 ISS nuclear export
GO:0051170 ISS nuclear import

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000011020 hnrnpa1a heterogeneous nuclear ribonucleoprotein A1a protein_coding Danio_rerio
ENSDARG00000036675 hnrnpa1b heterogeneous nuclear ribonucleoprotein A1b protein_coding Danio_rerio
ENSG00000139675 HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1-like 2 protein_coding Homo_sapiens

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