C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087351 Hnrnpa1-202 ENSMUSG00000046434 10090 + 15:103240432-103244955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087351 65.639±27.26 8.337±2.79 117.021±0.84 214.806±86.00 25.460±6.42 20.110±8.00 14.664±7.37 21.868±3.87 209.731±243.28 41.644±7.55 19.200±5.65 100.530±80.92 180.136±119.72 28.998±7.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SU CIL_0007SU_0002 VISTA 15:102699781-103302958
CIL_00084M CIL_00084M_0002 VISTA 15:102713812-103314964
CIL_0002TM CIL_0002TM_0003 CGP 15:103191544-103244955
CIL_0002TL CIL_0002TL_0003 CGP 15:103240432-103258403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0003697 ISS single-stranded DNA binding
GO:0003723 IEA RNA binding
GO:0005634 IDA nucleus
GO:0005654 ISS nucleoplasm
GO:0005681 ISS spliceosomal complex
GO:0005737 ISS cytoplasm
GO:0008380 IDA RNA splicing
GO:0030529 ISS ribonucleoprotein complex
GO:0051028 IEA mRNA transport
GO:0051168 ISS nuclear export
GO:0051170 ISS nuclear import

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330752 HNRNPA1-023 protein_coding Homo_sapiens 0 965
ENST00000340913 HNRNPA1-002 protein_coding Homo_sapiens 0 1110
ENST00000342073 HNRNPA1P61-001 processed_pseudogene Homo_sapiens 0 1048
ENST00000357495 HNRNPA1L2-001 protein_coding Homo_sapiens 0 1832
ENST00000391992 HNRNPA1P34-001 processed_pseudogene Homo_sapiens 0 1077
ENST00000394002 HNRNPA1P6-001 unprocessed_pseudogene Homo_sapiens 0 1118
ENST00000396326 HNRNPA1P32-001 processed_pseudogene Homo_sapiens 0 887
ENST00000397777 HNRNPA1P41-001 processed_pseudogene Homo_sapiens 0 604
ENST00000401954 HNRNPA1P1-001 processed_pseudogene Homo_sapiens 0 1016
ENST00000403629 HNRNPA1P58-001 processed_pseudogene Homo_sapiens 0 706
ENST00000404243 HNRNPA1P37-001 processed_pseudogene Homo_sapiens 0 1094
ENST00000405292 HNRNPA1P19-001 processed_pseudogene Homo_sapiens 0 431
ENST00000411674 HNRNPA1P64-001 processed_pseudogene Homo_sapiens 0 776
ENST00000411735 HNRNPA1P46-001 processed_pseudogene Homo_sapiens 0 1014
ENST00000411857 HNRNPA1P54-001 processed_pseudogene Homo_sapiens 0 824
ENST00000412087 HNRNPA1P27-001 processed_pseudogene Homo_sapiens 0 1194
ENST00000414732 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1177
ENST00000416539 HNRNPA1P66-001 processed_pseudogene Homo_sapiens 0 869
ENST00000420836 HNRNPA1P70-001 processed_pseudogene Homo_sapiens 0 723
ENST00000421336 HNRNPA1P49-001 processed_pseudogene Homo_sapiens 0 776
ENST00000421426 HNRNPA1P33-001 processed_pseudogene Homo_sapiens 0 719
ENST00000422644 HNRNPA1P25-001 processed_pseudogene Homo_sapiens 0 905
ENST00000424115 HNRNPA1P21-001 processed_pseudogene Homo_sapiens 0 1186
ENST00000424329 HNRNPA1P30-002 processed_transcript Homo_sapiens 5e-40 169
ENST00000424481 HNRNPA1P28-001 processed_pseudogene Homo_sapiens 0 1184
ENST00000425806 HNRNPA1P68-001 processed_pseudogene Homo_sapiens 0 780
ENST00000426371 HNRNPA1P40-001 processed_pseudogene Homo_sapiens 0 1055
ENST00000427917 HNRNPA1P63-001 processed_pseudogene Homo_sapiens 0 1147
ENST00000429216 HNRNPA1P35-001 processed_pseudogene Homo_sapiens 0 1314
ENST00000430583 HNRNPA1P59-001 processed_pseudogene Homo_sapiens 0 734
ENST00000431344 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1182
ENST00000431359 HNRNPA1P57-002 processed_transcript Homo_sapiens 0 250
ENST00000432375 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1194
ENST00000433537 HNRNPA1P18-001 processed_pseudogene Homo_sapiens 0 601
ENST00000436090 HNRNPA1P8-001 processed_pseudogene Homo_sapiens 0 1269
ENST00000436809 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1188
ENST00000437295 HNRNPA1P22-001 processed_pseudogene Homo_sapiens 0 1142
ENST00000440214 AC108039.3-001 processed_pseudogene Homo_sapiens 0 411
ENST00000440352 HNRNPA1P14-001 processed_pseudogene Homo_sapiens 0 989
ENST00000440547 HNRNPA1P39-001 processed_pseudogene Homo_sapiens 0 1153
ENST00000440699 HNRNPA1P30-001 transcribed_processed_pseudogene Homo_sapiens 0 1018
ENST00000441603 HNRNPA1P53-001 processed_pseudogene Homo_sapiens 0 1098
ENST00000444886 HNRNPA1P15-001 processed_pseudogene Homo_sapiens 0 1110
ENST00000444945 HNRNPA1P10-001 processed_pseudogene Homo_sapiens 0 1367
ENST00000446472 HNRNPA1P73-001 processed_pseudogene Homo_sapiens 0 885
ENST00000446988 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1205
ENST00000446999 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1205
ENST00000448627 HNRNPA1P31-001 processed_pseudogene Homo_sapiens 0 599
ENST00000450405 HNRNPA1P51-001 processed_pseudogene Homo_sapiens 0 1227
ENST00000450624 HNRNPA1P9-001 processed_pseudogene Homo_sapiens 0 1016
ENST00000452488 HNRNPA1P57-001 transcribed_processed_pseudogene Homo_sapiens 0 1138
ENST00000452680 HNRNPA1P43-001 processed_pseudogene Homo_sapiens 0 785
ENST00000452727 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1194
ENST00000453073 HNRNPA1P47-001 processed_pseudogene Homo_sapiens 0 499
ENST00000457180 HNRNPA1P2-001 processed_pseudogene Homo_sapiens 0 1205
ENST00000457695 HNRNPA1P26-001 processed_pseudogene Homo_sapiens 0 821
ENST00000458678 HNRNPA1P42-001 processed_pseudogene Homo_sapiens 0 1153
ENST00000474219 HNRNPA3P8-001 processed_pseudogene Homo_sapiens 0 784
ENST00000476029 HNRNPA1P24-001 processed_pseudogene Homo_sapiens 0 628
ENST00000484852 HNRNPA1P20-001 processed_pseudogene Homo_sapiens 0 1131
ENST00000491091 HNRNPA1P23-001 processed_pseudogene Homo_sapiens 0 752
ENST00000496620 HNRNPA1P17-001 unprocessed_pseudogene Homo_sapiens 0 773
ENST00000503999 HNRNPA1P44-001 processed_pseudogene Homo_sapiens 0 918
ENST00000505767 HNRNPA1P56-001 processed_pseudogene Homo_sapiens 0 1155
ENST00000505935 HNRNPA1P55-001 processed_pseudogene Homo_sapiens 0 1140
ENST00000508873 HNRNPA1P65-001 processed_pseudogene Homo_sapiens 0 966
ENST00000509706 HNRNPA1P4-001 processed_pseudogene Homo_sapiens 0 1070
ENST00000510646 HNRNPA1P13-001 processed_pseudogene Homo_sapiens 0 1127
ENST00000515379 HNRNPA1P12-001 processed_pseudogene Homo_sapiens 0 1284
ENST00000521273 HNRNPA1P7-001 processed_pseudogene Homo_sapiens 0 1358
ENST00000521313 HNRNPA1P36-001 processed_pseudogene Homo_sapiens 0 1155
ENST00000521638 HNRNPA3P7-001 processed_pseudogene Homo_sapiens 0 1002
ENST00000526810 HNRNPA1P60-001 processed_pseudogene Homo_sapiens 0 1055
ENST00000529475 HNRNPA1P76-001 processed_pseudogene Homo_sapiens 0 279
ENST00000529511 HNRNPA1P72-001 processed_pseudogene Homo_sapiens 0 688
ENST00000546500 HNRNPA1-001 protein_coding Homo_sapiens 0 2248
ENST00000546565 HNRNPA1P50-001 processed_pseudogene Homo_sapiens 0 1029
ENST00000547276 HNRNPA1-012 protein_coding Homo_sapiens 0 1101
ENST00000547566 HNRNPA1-006 nonsense_mediated_decay Homo_sapiens 0 1435
ENST00000547708 HNRNPA1-015 protein_coding Homo_sapiens 0 514
ENST00000547870 HNRNPA1-016 retained_intron Homo_sapiens 0 632
ENST00000548688 HNRNPA1-013 protein_coding Homo_sapiens 0 870
ENST00000550482 HNRNPA1-018 protein_coding Homo_sapiens 0 843
ENST00000550994 HNRNPA1-014 protein_coding Homo_sapiens 0 638
ENST00000551679 HNRNPA1-020 retained_intron Homo_sapiens 0 322
ENST00000551702 HNRNPA1-019 protein_coding Homo_sapiens 0 424
ENST00000552536 HNRNPA1P69-001 processed_pseudogene Homo_sapiens 0 797
ENST00000558213 HNRNPA1P5-001 processed_pseudogene Homo_sapiens 0 1171
ENST00000559135 HNRNPA1P71-001 processed_pseudogene Homo_sapiens 0 937
ENST00000560782 HNRNPA1P74-001 processed_pseudogene Homo_sapiens 0 791
ENST00000560893 HNRNPA1P45-001 processed_pseudogene Homo_sapiens 0 383
ENST00000562726 HNRNPA1P48-002 processed_transcript Homo_sapiens 0 1888
ENST00000565308 HNRNPA1P48-001 transcribed_processed_pseudogene Homo_sapiens 0 1371
ENST00000570662 SRR-009 protein_coding Homo_sapiens 0 339
ENST00000575692 HNRNPA1P16-001 processed_pseudogene Homo_sapiens 0 1190
ENST00000580106 HNRNPA1P11-001 processed_pseudogene Homo_sapiens 0 1040
ENST00000599047 HNRNPA1P52-001 processed_pseudogene Homo_sapiens 0 1122
ENST00000604027 HNRNPA1P67-001 processed_pseudogene Homo_sapiens 0 989

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