C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002TL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036675-ENSDARG00000020606 CGP 7955 23:36358083-36367896
GeneTranscriptPositionBiotype
ENSDARG00000036675 (hnrnpa1b)
heterogeneous nuclear ribonucleoprotein A1b 		ENSDART00000053267 (hnrnpa1b-001) 36358083-36361161 protein_coding
ENSDART00000127174 (hnrnpa1b-002) 36359205-36361962 nonsense_mediated_decay
ENSDART00000131711 (hnrnpa1b-004) 36360261-36361113 protein_coding
ENSDART00000134607 (hnrnpa1b-003) 36359972-36361959 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0002TL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135486-ENSG00000123405 CGP 9606 12:54280193-54301121
GeneTranscriptPositionBiotype
ENSG00000123405 (NFE2)
nuclear factor, erythroid 2 		ENST00000312156 (NFE2-003) 54292111-54295760 protein_coding
ENST00000435572 (NFE2-001) 54292111-54301121 protein_coding
ENST00000540264 (NFE2-004) 54292173-54295758 protein_coding
ENST00000553070 (NFE2-002) 54292374-54301015 protein_coding
ENST00000553198 (NFE2-005) 54292465-54297884 protein_coding
ENSG00000135486 (HNRNPA1)
heterogeneous nuclear ribonucleoprotein A1 		ENST00000330752 (HNRNPA1-023) 54280775-54284881 protein_coding
ENST00000340913 (HNRNPA1-002) 54280755-54285214 protein_coding
ENST00000546500 (HNRNPA1-001) 54280193-54287087 protein_coding
ENST00000547276 (HNRNPA1-012) 54280780-54285251 protein_coding
ENST00000547566 (HNRNPA1-006) 54280748-54287088 nonsense_mediated_decay
ENST00000547708 (HNRNPA1-015) 54280748-54283878 protein_coding
ENST00000547870 (HNRNPA1-016) 54280749-54282472 retained_intron
ENST00000548688 (HNRNPA1-013) 54281006-54282626 protein_coding
ENST00000550482 (HNRNPA1-018) 54282198-54284569 protein_coding
ENST00000550994 (HNRNPA1-014) 54281186-54282284 protein_coding
ENST00000551665 (HNRNPA1-021) 54285907-54287051 retained_intron
ENST00000551679 (HNRNPA1-020) 54283723-54284371 retained_intron
ENST00000551702 (HNRNPA1-019) 54280763-54282486 protein_coding
ENST00000551803 (HNRNPA1-022) 54285947-54287087 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0002TL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000046434-ENSMUSG00000058794 CGP 10090 15:103240432-103258403
GeneTranscriptPositionBiotype
ENSMUSG00000046434 (Hnrnpa1)
heterogeneous nuclear ribonucleoprotein A1 		ENSMUST00000036004 (Hnrnpa1-201) 103240432-103244955 protein_coding
ENSMUST00000087351 (Hnrnpa1-202) 103240432-103244955 protein_coding
ENSMUSG00000058794 (Nfe2)
nuclear factor, erythroid derived 2 		ENSMUST00000075192 (Nfe2-001) 103248212-103255439 protein_coding
ENSMUST00000131364 (Nfe2-010) 103249007-103254062 protein_coding
ENSMUST00000132438 (Nfe2-006) 103249349-103258403 protein_coding
ENSMUST00000132836 (Nfe2-009) 103249069-103251687 protein_coding
ENSMUST00000133600 (Nfe2-003) 103248217-103251465 protein_coding
ENSMUST00000134193 (Nfe2-007) 103248955-103253152 protein_coding
ENSMUST00000134554 (Nfe2-004) 103248275-103251515 protein_coding
ENSMUST00000149111 (Nfe2-002) 103248220-103251676 protein_coding
ENSMUST00000154510 (Nfe2-008) 103249239-103252810 protein_coding
ENSMUST00000156927 (Nfe2-005) 103248217-103251516 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TL_0001ENSDARG00000036675ENSDART00000053267ENSDART00000127174ENSDART00000131711ENSDART00000134607CIL_0002TL_0002ENSG00000123405ENST00000312156ENST00000435572ENST00000540264ENST00000553070ENST00000553198ENSG00000135486ENST00000330752ENST00000340913ENST00000546500ENST00000547276ENST00000547566ENST00000547708ENST00000547870ENST00000548688ENST00000550482ENST00000550994ENST00000551665ENST00000551679ENST00000551702ENST00000551803CIL_0002TL_0003ENSMUSG00000046434ENSMUST00000036004ENSMUST00000087351ENSMUSG00000058794ENSMUST00000075192ENSMUST00000131364ENSMUST00000132438ENSMUST00000132836ENSMUST00000133600ENSMUST00000134193ENSMUST00000134554ENSMUST00000149111ENSMUST00000154510ENSMUST00000156927
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002TL_0001ENSDARG00000036675ENSDART00000053267ENSDART00000127174CIL_0002TL_0002ENSG00000123405ENST00000312156ENST00000435572ENST00000553070ENST00000553198ENSG00000135486ENST00000330752ENST00000340913ENST00000546500ENST00000547276ENST00000547566ENST00000547708ENST00000550482CIL_0002TL_0003ENSMUSG00000046434ENSMUST00000036004ENSMUST00000087351ENSMUSG00000058794ENSMUST00000075192ENSMUST00000131364ENSMUST00000132836ENSMUST00000133600ENSMUST00000134193ENSMUST00000134554ENSMUST00000149111ENSMUST00000154510ENSMUST00000156927
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036675 ENSDART00000053267 N/A N/A N/A 33.276±26.60 N/A N/A 63.031±33.77 156.518±0.00 10.265±0.00 N/A 14.757±0.00 N/A N/A N/A
ENSDART00000127174 N/A N/A N/A 27.619±0.00 N/A N/A 68.658±7.75 98.164±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000131711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000134607 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000123405 ENST00000312156 N/A N/A N/A N/A N/A 0.212±0.00 N/A N/A N/A 1.563±0.00 N/A N/A 0.952±0.49 N/A
ENST00000435572 0.787±0.00 N/A N/A 0.144±0.00 0.371±0.00 N/A 0.195±0.13 N/A 0.448±0.12 5.360±4.40 N/A 0.164±0.00 2.235±0.60 0.836±0.19
ENST00000540264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553070 0.342±0.00 N/A N/A 0.187±0.00 N/A 0.351±0.00 N/A 0.165±0.00 0.073±0.00 N/A N/A 0.241±0.09 N/A N/A
ENST00000553198 0.351±0.00 0.053±0.00 0.352±0.00 N/A 0.098±0.00 0.127±0.00 N/A N/A N/A 0.314±0.00 0.385±0.00 0.108±0.00 N/A N/A
ENSG00000135486 ENST00000330752 N/A N/A 8.154±0.00 14.424±0.00 16.924±0.00 14.885±0.00 4.795±0.00 15.780±0.00 19.665±0.00 9.835±0.00 N/A 118.222±94.94 N/A N/A
ENST00000340913 108.033±0.00 130.322±0.00 N/A 59.873±0.00 73.415±0.00 65.920±59.25 20.198±18.80 47.690±0.00 10.718±4.46 49.559±0.00 72.527±0.00 146.058±145.75 130.490±27.63 60.346±28.15
ENST00000546500 N/A 16.649±0.00 N/A 3.196±0.00 N/A 5.950±0.00 0.834±0.00 N/A 3.173±1.15 N/A 2.270±0.00 14.377±10.54 N/A N/A
ENST00000547276 59.751±0.00 79.384±0.00 N/A 44.895±0.00 47.592±0.00 64.953±0.00 21.521±0.00 43.440±0.00 10.808±0.00 51.815±0.00 26.577±0.00 58.723±0.00 58.647±12.65 41.210±0.00
ENST00000547566 N/A N/A N/A N/A N/A N/A N/A N/A 8.017±0.00 38.416±0.00 N/A 255.745±0.00 98.543±21.57 N/A
ENST00000547708 190.881±0.00 216.918±0.00 26.193±0.00 73.421±57.27 95.278±59.29 129.833±99.24 31.252±21.59 56.512±36.63 36.046±10.31 75.734±46.89 49.415±12.67 319.058±276.81 524.487±0.00 191.690±40.29
ENST00000547870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550482 95.306±0.00 103.143±0.00 N/A 49.858±0.00 N/A N/A N/A N/A N/A 13.089±0.00 N/A 200.831±35.14 157.503±0.00 73.830±23.85
ENST00000550994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551679 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551803 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000046434 ENSMUST00000036004 7.378±0.78 4.168±0.00 N/A 99.897±61.53 N/A N/A 13.617±3.99 N/A 45.781±26.01 7.576±0.00 11.140±0.00 34.086±7.93 44.782±4.62 5.925±0.51
ENSMUST00000087351 65.639±27.26 8.337±2.79 117.021±0.84 214.806±86.00 25.460±6.42 20.110±8.00 14.664±7.37 21.868±3.87 209.731±243.28 41.644±7.55 19.200±5.65 100.530±80.92 180.136±119.72 28.998±7.08
ENSMUSG00000058794 ENSMUST00000075192 1.147±0.68 0.343±0.13 0.055±0.00 0.102±0.06 0.803±0.18 0.323±0.14 0.379±0.07 0.203±0.03 50.877±61.15 4.292±0.81 N/A 0.659±0.21 2.823±2.25 0.494±0.11
ENSMUST00000131364 N/A N/A N/A 0.041±0.00 0.585±0.20 N/A N/A N/A N/A N/A N/A 0.416±0.10 N/A N/A
ENSMUST00000132438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132836 N/A N/A N/A 0.075±0.00 0.795±0.00 0.339±0.04 N/A 0.126±0.00 N/A N/A N/A 0.143±0.00 N/A N/A
ENSMUST00000133600 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A 0.063±0.00 1.323±0.00 N/A
ENSMUST00000134193 0.128±0.00 N/A N/A N/A 0.321±0.01 0.322±0.00 N/A N/A 0.846±0.33 N/A N/A 0.259±0.00 1.430±0.00 N/A
ENSMUST00000134554 N/A 0.073±0.02 0.054±0.00 N/A 0.211±0.07 N/A N/A 0.071±0.01 N/A N/A 0.015±0.00 0.198±0.14 N/A N/A
ENSMUST00000149111 N/A N/A N/A N/A N/A N/A 0.144±0.04 N/A N/A N/A N/A 0.126±0.02 0.769±0.32 N/A
ENSMUST00000154510 N/A N/A N/A N/A N/A N/A 0.302±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156927 N/A 0.234±0.00 N/A N/A N/A 0.111±0.00 N/A N/A 0.345±0.06 N/A N/A 0.389±0.14 1.797±0.00 0.570±0.09

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