C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047242 Taf9b 10090 - X:106206883-106221158 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055497 Taf9b-001 106206883-106219901 protein_coding
  ENSMUST00000113495 Taf9b-002 106206883-106221158 protein_coding
  ENSMUST00000134547 Taf9b-003 106218340-106220750 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055497ENSMUST00000113495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055497 0.767±0.13 1.422±0.58 1.122±0.27 1.150±0.47 1.044±0.27 0.743±0.29 N/A 1.226±0.23 0.372±0.07 0.797±0.04 1.254±0.15 1.575±1.09 4.785±0.00 N/A
ENSMUST00000113495 3.908±0.95 3.031±1.35 7.274±0.00 2.916±0.12 3.897±0.94 1.539±0.52 4.243±0.38 6.606±0.44 1.474±1.32 6.335±1.39 3.020±0.73 2.629±1.23 5.389±4.86 6.466±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YZ CIL_0001YZ_0002 CGP X:106187100-106221158

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005669 IEA transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030307 IEA positive regulation of cell growth
GO:0033276 IEA transcription factor TFTC complex
GO:0043066 IEA negative regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0050821 IEA protein stabilization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077870 taf9 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor protein_coding Danio_rerio
ENSG00000187325 TAF9B TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa protein_coding Homo_sapiens

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