C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000113495 Taf9b-002 ENSMUSG00000047242 10090 - X:106206883-106221158 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000113495
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000113495 3.908±0.95 3.031±1.35 7.274±0.00 2.916±0.12 3.897±0.94 1.539±0.52 4.243±0.38 6.606±0.44 1.474±1.32 6.335±1.39 3.020±0.73 2.629±1.23 5.389±4.86 6.466±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YZ CIL_0001YZ_0002 CGP X:106187100-106221158

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005669 IEA transcription factor TFIID complex
GO:0006352 IEA DNA-templated transcription, initiation
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030307 IEA positive regulation of cell growth
GO:0033276 IEA transcription factor TFTC complex
GO:0043066 IEA negative regulation of apoptotic process
GO:0046982 IEA protein heterodimerization activity
GO:0050821 IEA protein stabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000217893 AK6-003 protein_coding Homo_sapiens 0 448
ENST00000310611 CYB561D1-003 protein_coding Homo_sapiens 0.00003 57
ENST00000328663 AK6-201 protein_coding Homo_sapiens 0 448
ENST00000341864 TAF9B-001 protein_coding Homo_sapiens 0 1033
ENST00000396646 TAF9BP1-001 processed_pseudogene Homo_sapiens 0 808
ENST00000430195 CYB561D1-002 protein_coding Homo_sapiens 0.00003 57
ENST00000480681 TAF9B-002 retained_intron Homo_sapiens 0 483
ENST00000503245 AK6-005 protein_coding Homo_sapiens 0 429
ENST00000504109 AK6-002 protein_coding Homo_sapiens 0 429
ENST00000506736 AK6-001 protein_coding Homo_sapiens 0 448
ENST00000508954 AK6-007 protein_coding Homo_sapiens 0 316
ENST00000509462 AK6-006 protein_coding Homo_sapiens 0 429
ENST00000512152 AK6-004 protein_coding Homo_sapiens 0 411
ENST00000615404 AK6-202 protein_coding Homo_sapiens 0 448
ENST00000616112 AK6-005 protein_coding Homo_sapiens 0 429
ENST00000616867 AK6-001 protein_coding Homo_sapiens 0 448
ENST00000617775 AK6-004 protein_coding Homo_sapiens 0 429
ENST00000617893 AK6-002 protein_coding Homo_sapiens 0 448
ENST00000620800 AK6-006 protein_coding Homo_sapiens 0 411
ENST00000622236 AK6-003 protein_coding Homo_sapiens 0 429
ENST00000622801 AK6-007 protein_coding Homo_sapiens 0 316

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