C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 41B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047554 Tmem41b 10090 - 7:109972187-109986929 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094097 Tmem41b-001 109972187-109986451 protein_coding
  ENSMUST00000118429 Tmem41b-002 109973485-109986929 protein_coding
  ENSMUST00000119929 Tmem41b-003 109973304-109986259 protein_coding
  ENSMUST00000124821 Tmem41b-005 109976593-109986275 nonsense_mediated_decay
  ENSMUST00000125703 Tmem41b-007 109974472-109978929 retained_intron
  ENSMUST00000135565 Tmem41b-006 109976660-109986249 nonsense_mediated_decay
  ENSMUST00000151587 Tmem41b-004 109979990-109986259 retained_intron
  ENSMUST00000154831 Tmem41b-008 109976593-109986162 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094097ENSMUST00000118429ENSMUST00000119929ENSMUST00000124821ENSMUST00000125703ENSMUST00000135565ENSMUST00000151587
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094097 1.999±0.75 2.201±0.52 2.333±0.25 1.723±1.11 1.536±0.32 2.183±0.59 1.441±0.16 1.791±0.60 1.357±0.32 2.618±0.38 0.895±0.26 2.310±0.93 0.839±0.00 1.579±1.03
ENSMUST00000118429 N/A 1.146±0.00 N/A N/A 2.312±1.36 2.544±1.04 N/A 3.984±1.32 2.636±0.00 1.677±0.00 1.106±0.17 1.212±0.00 N/A 6.119±2.15
ENSMUST00000119929 3.795±0.35 3.292±0.75 6.921±0.45 4.917±2.90 4.267±2.61 2.134±0.00 5.248±0.93 2.768±0.50 6.134±1.37 5.234±1.48 4.178±0.90 4.159±2.60 12.844±6.90 4.153±2.36
ENSMUST00000124821 5.134±0.25 2.778±0.44 N/A 5.228±0.00 N/A 7.420±1.71 N/A 4.232±0.00 7.750±0.00 N/A N/A 6.223±1.96 17.789±2.72 5.890±0.00
ENSMUST00000125703 2.884±0.00 N/A N/A 2.643±0.00 2.057±0.00 N/A 3.696±0.83 5.791±0.00 N/A N/A N/A 4.520±0.00 13.817±4.01 8.627±2.76
ENSMUST00000135565 5.262±0.00 9.513±1.14 N/A N/A 6.375±2.06 13.997±2.17 3.060±0.00 9.230±4.48 7.804±1.08 9.877±3.31 N/A 8.799±2.70 N/A N/A
ENSMUST00000151587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.045±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0001HO CIL_0001HO_0003 CGP 7:109893780-109986929
CIL_0001HI CIL_0001HI_0003 CGP 7:109972187-110055114

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007399 IEA nervous system development
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000080006 tmem41b transmembrane protein 41B protein_coding Danio_rerio
ENSG00000166471 TMEM41B transmembrane protein 41B protein_coding Homo_sapiens

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