C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 41B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118429 Tmem41b-002 ENSMUSG00000047554 10090 - 7:109973485-109986929 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungMuscleOvaryTestisENSMUST00000118429
Transcript ID Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000118429 1.146±0.00 2.312±1.36 2.544±1.04 3.984±1.32 2.636±0.00 1.677±0.00 1.106±0.17 1.212±0.00 6.119±2.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0001HO CIL_0001HO_0003 CGP 7:109893780-109986929
CIL_0001HI CIL_0001HI_0003 CGP 7:109972187-110055114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0007399 IEA nervous system development
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299596 TMEM41B-003 nonsense_mediated_decay Homo_sapiens 0 1037
ENST00000524543 TMEM41B-002 nonsense_mediated_decay Homo_sapiens 0 1026
ENST00000527813 TMEM41B-005 protein_coding Homo_sapiens 0 651
ENST00000528080 TMEM41B-001 protein_coding Homo_sapiens 0 1051
ENST00000533723 TMEM41B-004 protein_coding Homo_sapiens 0 396
ENST00000611268 TMEM41B-201 protein_coding Homo_sapiens 0 1037

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