C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 41B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135565 Tmem41b-006 ENSMUSG00000047554 10090 - 7:109976660-109986249 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryENSMUST00000135565
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000135565 5.262±0.00 9.513±1.14 6.375±2.06 13.997±2.17 3.060±0.00 9.230±4.48 7.804±1.08 9.877±3.31 8.799±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0001HO CIL_0001HO_0003 CGP 7:109893780-109986929
CIL_0001HI CIL_0001HI_0003 CGP 7:109972187-110055114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299596 TMEM41B-003 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000524543 TMEM41B-002 nonsense_mediated_decay Homo_sapiens 0 747
ENST00000527813 TMEM41B-005 protein_coding Homo_sapiens 0 625
ENST00000528080 TMEM41B-001 protein_coding Homo_sapiens 0 713
ENST00000533723 TMEM41B-004 protein_coding Homo_sapiens 0 396
ENST00000611268 TMEM41B-201 protein_coding Homo_sapiens 0 697

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