C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 41B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000124821 Tmem41b-005 ENSMUSG00000047554 10090 - 7:109976593-109986275 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000124821
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000124821 5.134±0.25 2.778±0.44 5.228±0.00 7.420±1.71 4.232±0.00 7.750±0.00 6.223±1.96 17.789±2.72 5.890±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009CP CIL_0009CP_0002 VISTA 7:109862809-110466321
CIL_0001HO CIL_0001HO_0003 CGP 7:109893780-109986929
CIL_0001HI CIL_0001HI_0003 CGP 7:109972187-110055114

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299596 TMEM41B-003 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000524543 TMEM41B-002 nonsense_mediated_decay Homo_sapiens 0 230
ENST00000527813 TMEM41B-005 protein_coding Homo_sapiens 0 230
ENST00000528080 TMEM41B-001 protein_coding Homo_sapiens 0 230
ENST00000533723 TMEM41B-004 protein_coding Homo_sapiens 0 230
ENST00000611268 TMEM41B-201 protein_coding Homo_sapiens 0 215

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