C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000080006-ENSDARG00000035751 CGP 7955 7:66964356-67034993
GeneTranscriptPositionBiotype
ENSDARG00000080006 (tmem41b)
transmembrane protein 41B 		ENSDART00000098277 (tmem41b-201) 66964356-66974907 protein_coding
ENSDART00000110614 (tmem41b-001) 66964862-66975055 protein_coding
ENSDARG00000082611 (SNORA23)
Small nucleolar RNA SNORA23 		ENSDART00000116857 (SNORA23.1-201) 67012725-67012905 snoRNA
ENSDARG00000083454 (SNORA23)
Small nucleolar RNA SNORA23 		ENSDART00000118968 (SNORA23.2-201) 67001908-67002086 snoRNA

Danio rerio Ensembl (Zv9)

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CIL_0001HI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166471-ENSG00000205339 CGP 9606 11:9280654-9448126
GeneTranscriptPositionBiotype
ENSG00000166471 (TMEM41B)
transmembrane protein 41B 		ENST00000299596 (TMEM41B-003) 9280654-9314567 nonsense_mediated_decay
ENST00000524543 (TMEM41B-002) 9280654-9314636 nonsense_mediated_decay
ENST00000527813 (TMEM41B-005) 9283547-9314630 protein_coding
ENST00000528080 (TMEM41B-001) 9280671-9314780 protein_coding
ENST00000533723 (TMEM41B-004) 9295096-9314633 protein_coding
ENST00000533867 (TMEM41B-006) 9283139-9288073 retained_intron
ENST00000611268 (TMEM41B-201) 9280657-9314567 protein_coding
ENSG00000201998 (SNORA23)
small nucleolar RNA, H/ACA box 23 		ENST00000365128 (SNORA23-201) 9428773-9428954 snoRNA
ENSG00000205339 (IPO7)
importin 7 		ENST00000379719 (IPO7-001) 9384622-9448126 protein_coding
ENST00000527431 (IPO7-003) 9384653-9414353 protein_coding
ENST00000528833 (IPO7-006) 9410069-9414591 retained_intron
ENST00000530037 (IPO7-005) 9423786-9425324 retained_intron
ENST00000531235 (IPO7-004) 9420279-9420669 retained_intron
ENST00000533233 (IPO7-002) 9384652-9410032 nonsense_mediated_decay
ENST00000533680 (IPO7-007) 9402734-9403540 processed_transcript
ENSG00000254397 (CTD-2371O3.2)
 ENST00000531111 (CTD-2371O3.2-001) 9430356-9433486 antisense
ENSG00000254884 (PRR13P2)
proline rich 13 pseudogene 2 		ENST00000533804 (PRR13P2-001) 9311284-9311689 processed_pseudogene
ENSG00000278792 (AC132192.1)
 ENST00000622606 (AC132192.1-201) 9434165-9434251 miRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0001HI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047554-ENSMUSG00000066232 CGP 10090 7:109972187-110055114
GeneTranscriptPositionBiotype
ENSMUSG00000047554 (Tmem41b)
transmembrane protein 41B 		ENSMUST00000094097 (Tmem41b-001) 109972187-109986451 protein_coding
ENSMUST00000118429 (Tmem41b-002) 109973485-109986929 protein_coding
ENSMUST00000119929 (Tmem41b-003) 109973304-109986259 protein_coding
ENSMUST00000124821 (Tmem41b-005) 109976593-109986275 nonsense_mediated_decay
ENSMUST00000125703 (Tmem41b-007) 109974472-109978929 retained_intron
ENSMUST00000135565 (Tmem41b-006) 109976660-109986249 nonsense_mediated_decay
ENSMUST00000151587 (Tmem41b-004) 109979990-109986259 retained_intron
ENSMUST00000154831 (Tmem41b-008) 109976593-109986162 nonsense_mediated_decay
ENSMUSG00000064451 (Snora23)
small nucleolar RNA, H/ACA box 23 		ENSMUST00000082517 (Snora23-201) 110046364-110046547 snoRNA
ENSMUSG00000064600 (Gm25636)
predicted gene, 25636 		ENSMUST00000082666 (Gm25636-201) 110023210-110023342 snoRNA
ENSMUSG00000065389 (Gm23100)
predicted gene, 23100 		ENSMUST00000083455 (Gm23100-201) 110003578-110003718 snRNA
ENSMUSG00000066232 (Ipo7)
importin 7 		ENSMUST00000084731 (Ipo7-201) 110018425-110055114 protein_coding
ENSMUSG00000101585 (RP24-272D15.1)
RIKEN cDNA 1600010M07 gene 		ENSMUST00000185931 (RP24-272D15.1-002) 109998412-110151202 lincRNA
ENSMUST00000188662 (RP24-272D15.1-004) 109998404-109999233 lincRNA
ENSMUST00000188824 (RP24-272D15.1-003) 110001140-110006631 lincRNA
ENSMUST00000191157 (RP24-272D15.1-001) 109998376-110006646 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HI_0001ENSDARG00000080006ENSDART00000098277ENSDART00000110614ENSDARG00000082611ENSDART00000116857ENSDARG00000083454ENSDART00000118968CIL_0001HI_0002ENSG00000166471ENST00000299596ENST00000524543ENST00000527813ENST00000528080ENST00000533723ENST00000533867ENST00000611268ENSG00000201998ENST00000365128ENSG00000205339ENST00000379719ENST00000527431ENST00000528833ENST00000530037ENST00000531235ENST00000533233ENST00000533680ENSG00000254397ENST00000531111ENSG00000254884ENST00000533804ENSG00000278792ENST00000622606CIL_0001HI_0003ENSMUSG00000047554ENSMUST00000094097ENSMUST00000118429ENSMUST00000119929ENSMUST00000124821ENSMUST00000125703ENSMUST00000135565ENSMUST00000151587ENSMUST00000154831ENSMUSG00000064451ENSMUST00000082517ENSMUSG00000064600ENSMUST00000082666ENSMUSG00000065389ENSMUST00000083455ENSMUSG00000066232ENSMUST00000084731ENSMUSG00000101585ENSMUST00000185931ENSMUST00000188662ENSMUST00000188824ENSMUST00000191157
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HI_0001ENSDARG00000080006ENSDART00000098277ENSDART00000110614ENSDARG00000082611ENSDART00000116857ENSDARG00000083454ENSDART00000118968CIL_0001HI_0002ENSG00000166471ENST00000299596ENST00000524543ENST00000528080ENST00000611268ENSG00000201998ENST00000365128ENSG00000205339ENST00000379719ENSG00000254397ENST00000531111ENSG00000254884ENST00000533804ENSG00000278792ENST00000622606CIL_0001HI_0003ENSMUSG00000047554ENSMUST00000094097ENSMUST00000118429ENSMUST00000119929ENSMUST00000124821ENSMUST00000125703ENSMUST00000135565ENSMUST00000151587ENSMUSG00000064451ENSMUST00000082517ENSMUSG00000064600ENSMUST00000082666ENSMUSG00000065389ENSMUST00000083455ENSMUSG00000066232ENSMUST00000084731ENSMUSG00000101585ENSMUST00000185931ENSMUST00000188662ENSMUST00000188824ENSMUST00000191157
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000080006 ENSDART00000098277 N/A N/A N/A 0.744±0.00 N/A N/A 0.241±0.00 1.263±0.00 0.440±0.00 N/A 0.630±0.00 N/A N/A N/A
ENSDART00000110614 N/A N/A N/A 2.471±1.38 N/A N/A 0.922±0.06 0.240±0.00 1.193±0.00 N/A 1.701±0.00 N/A N/A N/A
ENSDARG00000082611 ENSDART00000116857 N/A N/A N/A 16.752±0.00 N/A N/A 35.708±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000083454 ENSDART00000118968 N/A N/A N/A N/A N/A N/A N/A 21.324±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166471 ENST00000299596 2.016±0.00 2.601±0.00 N/A N/A 1.363±0.00 0.763±0.00 N/A N/A N/A 3.126±0.00 N/A N/A N/A 3.022±0.00
ENST00000524543 0.985±0.00 2.533±0.00 N/A 8.345±0.00 1.243±0.00 1.641±0.70 1.444±0.95 3.401±1.61 3.912±0.00 4.781±0.00 0.563±0.03 1.959±0.00 2.292±1.60 1.858±0.00
ENST00000527813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528080 N/A N/A 1.302±0.00 2.865±0.00 1.311±0.07 2.255±0.00 0.880±0.46 5.602±0.00 2.139±0.00 2.305±0.13 0.500±0.00 2.129±1.39 2.725±0.31 1.447±0.28
ENST00000533723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533867 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.767±0.08 2.142±0.00 1.414±0.00 N/A
ENSG00000201998 ENST00000365128 0.434±0.00 0.433±0.00 1074.560±0.00 131.192±131.01 1067.327±1067.24 3034.620±0.00 1158.300±0.00 723.931±723.68 3197.020±0.00 1015.239±1014.86 1485.900±0.00 885.213±1249.40 0.365±0.00 0.520±0.20
ENSG00000205339 ENST00000379719 5.264±0.00 2.311±0.00 7.733±0.00 9.999±0.47 10.969±3.15 10.817±3.55 16.434±6.56 6.192±1.53 12.992±12.15 17.856±3.30 21.909±10.63 15.618±7.20 13.432±2.50 5.449±2.80
ENST00000527431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000528833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000254397 ENST00000531111 0.017±0.00 0.173±0.00 N/A 0.140±0.00 0.185±0.00 0.084±0.00 0.206±0.02 0.245±0.00 0.146±0.00 0.452±0.00 0.577±0.00 0.074±0.00 0.321±0.00 0.127±0.09
ENSG00000254884 ENST00000533804 N/A N/A N/A 0.272±0.04 1.645±0.00 0.265±0.00 0.050±0.00 N/A N/A 1.063±0.00 N/A 1.045±0.59 0.461±0.00 0.292±0.00
ENSG00000278792 ENST00000622606 N/A N/A N/A 0.429±0.00 N/A N/A 1.069±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047554 ENSMUST00000094097 1.999±0.75 2.201±0.52 2.333±0.25 1.723±1.11 1.536±0.32 2.183±0.59 1.441±0.16 1.791±0.60 1.357±0.32 2.618±0.38 0.895±0.26 2.310±0.93 0.839±0.00 1.579±1.03
ENSMUST00000118429 N/A 1.146±0.00 N/A N/A 2.312±1.36 2.544±1.04 N/A 3.984±1.32 2.636±0.00 1.677±0.00 1.106±0.17 1.212±0.00 N/A 6.119±2.15
ENSMUST00000119929 3.795±0.35 3.292±0.75 6.921±0.45 4.917±2.90 4.267±2.61 2.134±0.00 5.248±0.93 2.768±0.50 6.134±1.37 5.234±1.48 4.178±0.90 4.159±2.60 12.844±6.90 4.153±2.36
ENSMUST00000124821 5.134±0.25 2.778±0.44 N/A 5.228±0.00 N/A 7.420±1.71 N/A 4.232±0.00 7.750±0.00 N/A N/A 6.223±1.96 17.789±2.72 5.890±0.00
ENSMUST00000125703 2.884±0.00 N/A N/A 2.643±0.00 2.057±0.00 N/A 3.696±0.83 5.791±0.00 N/A N/A N/A 4.520±0.00 13.817±4.01 8.627±2.76
ENSMUST00000135565 5.262±0.00 9.513±1.14 N/A N/A 6.375±2.06 13.997±2.17 3.060±0.00 9.230±4.48 7.804±1.08 9.877±3.31 N/A 8.799±2.70 N/A N/A
ENSMUST00000151587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.045±0.00 N/A N/A
ENSMUST00000154831 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000064451 ENSMUST00000082517 N/A 9.560±3.14 3.007±0.75 2.609±0.48 24.618±8.21 26.123±18.14 6.809±0.00 6.569±5.06 8.362±5.38 8.856±0.00 0.776±0.27 12.428±9.68 3.361±3.46 4.471±0.00
ENSMUSG00000064600 ENSMUST00000082666 N/A N/A N/A N/A N/A N/A N/A N/A 6.324±1.56 N/A N/A N/A 13.279±0.00 N/A
ENSMUSG00000065389 ENSMUST00000083455 N/A N/A N/A N/A N/A N/A N/A 523.868±0.00 24.586±0.00 N/A N/A 14.176±3.94 9.941±0.00 575.336±0.00
ENSMUSG00000066232 ENSMUST00000084731 N/A 8.337±1.25 3.906±0.00 10.579±0.00 6.247±0.40 5.147±0.92 3.271±0.71 7.320±0.42 7.704±0.24 N/A 4.799±1.21 10.550±8.62 14.670±5.44 12.673±0.00
ENSMUSG00000101585 ENSMUST00000185931 0.258±0.06 0.231±0.00 N/A 0.028±0.00 0.255±0.03 0.137±0.04 0.154±0.07 0.123±0.07 N/A 0.091±0.00 N/A 0.534±0.84 0.655±0.44 1.869±2.80
ENSMUST00000188662 0.142±0.00 N/A 0.121±0.00 N/A 1.454±0.00 N/A N/A N/A N/A N/A 0.076±0.00 0.090±0.00 N/A N/A
ENSMUST00000188824 N/A N/A N/A N/A 0.639±0.00 N/A N/A N/A N/A 0.251±0.00 N/A N/A 0.292±0.00 N/A
ENSMUST00000191157 0.928±0.33 0.265±0.11 0.639±0.36 0.043±0.03 1.076±0.36 0.139±0.03 0.103±0.00 0.234±0.00 0.559±0.52 0.733±0.27 0.195±0.02 0.427±0.17 0.237±0.24 N/A

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