C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102696 Rps8-001 ENSMUSG00000047675 10090 - 4:117153827-117156243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102696
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102696 109.403±45.34 27.314±3.99 507.359±14.05 165.083±95.52 106.793±39.96 84.645±9.01 75.133±3.79 114.537±24.97 305.592±291.37 85.747±8.74 213.416±14.25 201.758±186.79 381.209±213.06 51.862±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000462 IBA maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003735 IBA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005925 IEA focal adhesion
GO:0006414 IBA translational elongation
GO:0016020 IEA membrane
GO:0022627 IBA cytosolic small ribosomal subunit
GO:0030529 ISS ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372209 RPS8-003 protein_coding Homo_sapiens 0 549
ENST00000372214 RP11-571F15.3-001 processed_pseudogene Homo_sapiens 0 556
ENST00000396651 RPS8-001 protein_coding Homo_sapiens 0 900
ENST00000415328 RP11-229A12.2-001 processed_pseudogene Homo_sapiens 0 562
ENST00000426177 RPS8P6-001 processed_pseudogene Homo_sapiens 0 241
ENST00000454541 RP11-179H18.5-001 processed_pseudogene Homo_sapiens 0 634
ENST00000460876 RP11-2F9.3-001 processed_pseudogene Homo_sapiens 0 678
ENST00000462935 RPS8P3-001 processed_pseudogene Homo_sapiens 0 606
ENST00000464658 RPS8-006 processed_transcript Homo_sapiens 0 549
ENST00000470475 RPS8-005 processed_transcript Homo_sapiens 0 302
ENST00000474582 RPS8-008 processed_transcript Homo_sapiens 0 298
ENST00000481419 AC006539.2-001 processed_pseudogene Homo_sapiens 2e-27 126
ENST00000484005 RP11-252I14.1-001 processed_pseudogene Homo_sapiens 0 418
ENST00000484599 RPS8-007 processed_transcript Homo_sapiens 0 207
ENST00000485390 RPS8-004 processed_transcript Homo_sapiens 0 806
ENST00000492328 ZNF90-004 processed_transcript Homo_sapiens 2e-27 126
ENST00000497035 RPS8-002 processed_transcript Homo_sapiens 0 643

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