C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sushi, nidogen and EGF-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172289 Sned1-002 ENSMUSG00000047793 10090 + 1:93235851-93284507 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonKidneyLiverLungOvaryTestisENSMUST00000172289
Transcript ID Adrenal Colon Kidney Liver Lung Ovary Testis
ENSMUST00000172289 2.599±0.25 1.564±0.16 1.286±0.00 1.200±0.00 5.061±0.43 5.697±1.46 0.848±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UE CIL_0004UE_0003 CGP 1:93194049-93301065
CIL_0004GT CIL_0004GT_0002 CGP 1:93235841-93305915

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310397 SNED1-001 protein_coding Homo_sapiens 0 3269
ENST00000342631 SNED1-201 protein_coding Homo_sapiens 6.99949e-42 176
ENST00000401644 SNED1-008 protein_coding Homo_sapiens 0 846
ENST00000401884 SNED1-005 protein_coding Homo_sapiens 0 3269
ENST00000405547 SNED1-004 protein_coding Homo_sapiens 0 3269
ENST00000466618 SNED1-003 retained_intron Homo_sapiens 8.00001e-42 176
ENST00000469006 SNED1-010 processed_transcript Homo_sapiens 0 965
ENST00000483962 SNED1-011 retained_intron Homo_sapiens 0 276

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