C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sushi, nidogen and EGF-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062202 Sned1-001 ENSMUSG00000047793 10090 + 1:93235841-93301065 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062202
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062202 8.824±6.31 4.373±0.78 4.516±0.60 2.154±1.36 5.213±1.38 2.300±0.67 1.710±0.25 1.886±0.71 0.557±0.46 6.248±0.54 0.783±0.15 7.457±1.62 0.529±0.33 1.062±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UE CIL_0004UE_0003 CGP 1:93194049-93301065
CIL_0004GT CIL_0004GT_0002 CGP 1:93235841-93305915

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007160 IEA cell-matrix adhesion
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310397 SNED1-001 protein_coding Homo_sapiens 0 4150
ENST00000342631 SNED1-201 protein_coding Homo_sapiens 0 1341
ENST00000401644 SNED1-008 protein_coding Homo_sapiens 0 846
ENST00000401884 SNED1-005 protein_coding Homo_sapiens 0 3855
ENST00000405547 SNED1-004 protein_coding Homo_sapiens 0 3827
ENST00000466618 SNED1-003 retained_intron Homo_sapiens 0 1341
ENST00000469006 SNED1-010 processed_transcript Homo_sapiens 0 965
ENST00000483962 SNED1-011 retained_intron Homo_sapiens 0 276

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