C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 4A (RBP1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048118 Arid4a 10090 + 12:71015990-71098592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046305 Arid4a-001 71015990-71098592 protein_coding
  ENSMUST00000125125 Arid4a-003 71016708-71047339 protein_coding
  ENSMUST00000134718 Arid4a-002 71016029-71067261 processed_transcript
  ENSMUST00000135709 Arid4a-004 71048341-71075405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046305ENSMUST00000125125ENSMUST00000135709
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046305 0.948±0.21 1.476±0.32 7.793±1.41 4.308±1.80 2.498±0.57 1.127±0.44 1.054±0.13 1.342±0.16 3.249±2.77 3.302±0.74 1.475±0.31 3.316±3.18 3.373±1.71 2.050±1.44
ENSMUST00000125125 1.619±0.00 1.404±0.41 N/A N/A 1.841±0.00 0.862±0.00 N/A N/A N/A N/A N/A 0.902±0.15 N/A N/A
ENSMUST00000135709 N/A N/A N/A 29.986±0.00 N/A N/A N/A N/A N/A N/A N/A 23.804±0.00 8.514±1.15 42.102±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LX CIL_0004LX_0002 CGP 12:70974621-71098592
CIL_0001K9 CIL_0001K9_0002 CGP 12:71015990-71123222

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006349 IGI regulation of gene expression by genetic imprinting
GO:0007283 IGI spermatogenesis
GO:0017053 IEA transcriptional repressor complex
GO:0034773 IGI histone H4-K20 trimethylation
GO:0036124 IGI histone H3-K9 trimethylation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048821 IMP erythrocyte development
GO:0080182 IMP histone H3-K4 trimethylation
GO:0097368 IGI establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043873 arid4a AT rich interactive domain 4A (RBP1-like) protein_coding Danio_rerio
ENSG00000032219 ARID4A AT rich interactive domain 4A (RBP1-like) protein_coding Homo_sapiens

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