C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4A (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046305 Arid4a-001 ENSMUSG00000048118 10090 + 12:71015990-71098592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046305 0.948±0.21 1.476±0.32 7.793±1.41 4.308±1.80 2.498±0.57 1.127±0.44 1.054±0.13 1.342±0.16 3.249±2.77 3.302±0.74 1.475±0.31 3.316±3.18 3.373±1.71 2.050±1.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LX CIL_0004LX_0002 CGP 12:70974621-71098592
CIL_0001K9 CIL_0001K9_0002 CGP 12:71015990-71123222

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006349 IGI regulation of gene expression by genetic imprinting
GO:0007283 IGI spermatogenesis
GO:0017053 IEA transcriptional repressor complex
GO:0034773 IGI histone H4-K20 trimethylation
GO:0036124 IGI histone H3-K9 trimethylation
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048821 IMP erythrocyte development
GO:0080182 IMP histone H3-K4 trimethylation
GO:0097368 IGI establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000128291 arid4a-201 protein_coding Danio_rerio 3e-24 119
ENSDART00000151847 arid4a-003 protein_coding Danio_rerio 3e-24 119
ENST00000348476 ARID4A-201 protein_coding Homo_sapiens 0 3502
ENST00000355431 ARID4A-001 protein_coding Homo_sapiens 0 4257
ENST00000395168 ARID4A-003 protein_coding Homo_sapiens 0 3469
ENST00000417477 ARID4A-009 protein_coding Homo_sapiens 0 2015
ENST00000424658 ARID4A-006 protein_coding Homo_sapiens 0 276
ENST00000431317 ARID4A-002 protein_coding Homo_sapiens 0 3321
ENST00000431612 ARID4A-004 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000445108 ARID4A-005 protein_coding Homo_sapiens 0 942
ENST00000466065 ARID4A-008 retained_intron Homo_sapiens 0 313

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