C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004LX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100567-ENSG00000032219 CGP 9606 14:58244831-58373887
GeneTranscriptPositionBiotype
ENSG00000032219 (ARID4A)
AT rich interactive domain 4A (RBP1-like) 		ENST00000348476 (ARID4A-201) 58298504-58373730 protein_coding
ENST00000355431 (ARID4A-001) 58298385-58373733 protein_coding
ENST00000395168 (ARID4A-003) 58298556-58372226 protein_coding
ENST00000417477 (ARID4A-009) 58331287-58365300 protein_coding
ENST00000424658 (ARID4A-006) 58299331-58304990 protein_coding
ENST00000431317 (ARID4A-002) 58299537-58373887 protein_coding
ENST00000431612 (ARID4A-004) 58298559-58306112 nonsense_mediated_decay
ENST00000445108 (ARID4A-005) 58298588-58330169 protein_coding
ENST00000466065 (ARID4A-008) 58365475-58371960 retained_intron
ENST00000469635 (ARID4A-007) 58353454-58360991 retained_intron
ENST00000553355 (ARID4A-010) 58351297-58359172 processed_transcript
ENSG00000100567 (PSMA3)
proteasome (prosome, macropain) subunit, alpha type, 3 		ENST00000216455 (PSMA3-001) 58244831-58272007 protein_coding
ENST00000412908 (PSMA3-002) 58244877-58272012 protein_coding
ENST00000553665 (PSMA3-008) 58244856-58258454 retained_intron
ENST00000553677 (PSMA3-007) 58257925-58272006 protein_coding
ENST00000554207 (PSMA3-005) 58263524-58267796 retained_intron
ENST00000554456 (PSMA3-014) 58244874-58245478 processed_transcript
ENST00000554812 (PSMA3-006) 58244846-58268139 retained_intron
ENST00000555743 (PSMA3-016) 58244879-58267528 retained_intron
ENST00000555931 (PSMA3-011) 58244873-58267504 nonsense_mediated_decay
ENST00000556321 (PSMA3-015) 58247789-58258081 retained_intron
ENST00000557087 (PSMA3-012) 58244866-58270998 nonsense_mediated_decay
ENST00000557290 (PSMA3-004) 58269975-58272004 retained_intron
ENST00000557508 (PSMA3-013) 58244904-58272007 protein_coding
ENSG00000139971 (C14orf37)
chromosome 14 open reading frame 37 		ENST00000267485 (C14orf37-001) 58000761-58152213 protein_coding
ENST00000334342 (C14orf37-002) 58116124-58152183 processed_transcript
ENST00000554218 (C14orf37-006) 58139101-58298139 processed_transcript
ENST00000555101 (C14orf37-004) 58131207-58133131 protein_coding
ENST00000556788 (C14orf37-005) 57999735-58004024 processed_transcript
ENST00000557175 (C14orf37-003) 58116116-58139241 processed_transcript
ENSG00000180189 (HMGB1P14)
high mobility group box 1 pseudogene 14 		ENST00000557424 (HMGB1P14-001) 58284773-58285363 processed_pseudogene
ENSG00000252782 (RNU6-341P)
RNA, U6 small nuclear 341, pseudogene 		ENST00000516973 (RNU6-341P-201) 58292293-58292388 snRNA
ENSG00000258658 (RP11-517O13.3)
 ENST00000556390 (RP11-517O13.3-001) 58370023-58395641 antisense
ENSG00000258682 (CTD-2002H8.2)
 ENST00000557322 (CTD-2002H8.2-001) 58264662-58269681 sense_overlapping
ENSG00000279636 (LINC00216)
long intergenic non-protein coding RNA 216 		ENST00000623548 (LINC00216-001) 58288033-58289158 lincRNA
CIL_0004LX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000060073-ENSMUSG00000048118 CGP 10090 12:70974621-71098592
GeneTranscriptPositionBiotype
ENSMUSG00000048118 (Arid4a)
AT rich interactive domain 4A (RBP1-like) 		ENSMUST00000046305 (Arid4a-001) 71015990-71098592 protein_coding
ENSMUST00000125125 (Arid4a-003) 71016708-71047339 protein_coding
ENSMUST00000134718 (Arid4a-002) 71016029-71067261 processed_transcript
ENSMUST00000135709 (Arid4a-004) 71048341-71075405 protein_coding
ENSMUSG00000060073 (Psma3)
proteasome (prosome, macropain) subunit, alpha type 3 		ENSMUST00000071704 (Psma3-005) 70974715-70994475 nonsense_mediated_decay
ENSMUST00000160027 (Psma3-001) 70974621-70996347 protein_coding
ENSMUST00000160683 (Psma3-004) 70974671-70994501 retained_intron
ENSMUST00000160864 (Psma3-007) 70974683-70994505 protein_coding
ENSMUST00000161041 (Psma3-003) 70974708-70979694 retained_intron
ENSMUST00000162626 (Psma3-002) 70974671-70994921 nonsense_mediated_decay
ENSMUST00000162851 (Psma3-008) 70974689-70994504 nonsense_mediated_decay
ENSMUST00000162898 (Psma3-009) 70986892-70994505 protein_coding
ENSMUST00000163035 (Psma3-006) 70974719-70984837 retained_intron
ENSMUSG00000085622 (3110056K07Rik)
RIKEN cDNA 3110056K07 gene 		ENSMUST00000127129 (3110056K07Rik-001) 70991615-71015596 antisense
ENSMUST00000136690 (3110056K07Rik-002) 71009795-71015832 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004LX_0001ENSG00000032219ENST00000348476ENST00000355431ENST00000395168ENST00000417477ENST00000431317ENST00000445108ENSG00000100567ENST00000216455ENST00000412908ENST00000554812ENST00000555743ENST00000557087ENST00000557290ENST00000557508ENSG00000139971ENST00000267485ENST00000334342ENSG00000180189ENST00000557424ENSG00000252782ENST00000516973ENSG00000258658ENST00000556390ENSG00000258682ENST00000557322ENSG00000279636ENST00000623548CIL_0004LX_0002ENSMUSG00000048118ENSMUST00000046305ENSMUST00000125125ENSMUST00000135709ENSMUSG00000060073ENSMUST00000071704ENSMUST00000160027ENSMUST00000160683ENSMUST00000160864ENSMUST00000162851ENSMUSG00000085622ENSMUST00000127129ENSMUST00000136690
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000032219 ENST00000348476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A
ENST00000355431 1.872±0.00 2.450±0.00 N/A 2.018±1.28 N/A 2.186±0.09 0.798±0.67 2.081±0.06 1.682±1.06 1.106±0.08 0.305±0.06 2.301±0.37 0.846±0.52 2.495±0.60
ENST00000395168 1.639±0.00 1.495±0.00 N/A 1.417±0.00 1.441±0.00 0.993±0.00 0.924±0.00 0.681±0.00 N/A N/A 0.475±0.00 3.205±0.00 1.799±1.41 1.700±0.90
ENST00000417477 N/A N/A N/A 1.402±0.00 N/A N/A N/A N/A N/A N/A N/A 7.019±0.00 6.902±0.00 8.553±0.00
ENST00000424658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A
ENST00000431612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445108 N/A N/A N/A N/A N/A N/A N/A 3.626±0.00 N/A 2.809±0.00 N/A N/A N/A N/A
ENST00000466065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000100567 ENST00000216455 7.352±0.00 N/A N/A 6.591±0.52 23.136±4.99 13.329±3.36 21.784±12.93 19.009±0.00 26.791±15.07 12.382±3.89 24.794±7.32 39.296±12.03 47.740±13.83 17.308±7.51
ENST00000412908 4.326±0.00 N/A N/A 4.800±0.00 N/A 5.367±0.00 N/A N/A N/A 8.824±0.00 N/A 62.553±0.00 N/A 8.888±0.96
ENST00000553665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554207 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554812 N/A N/A N/A 2.425±0.00 N/A 4.717±0.00 2.261±0.00 N/A N/A N/A N/A 6.097±0.00 N/A N/A
ENST00000555743 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.821±0.00 N/A N/A N/A N/A
ENST00000555931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557087 N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.290±0.00 N/A 107.235±0.00 50.112±0.00 36.092±0.00
ENST00000557290 N/A N/A N/A N/A N/A N/A N/A N/A 6.577±0.00 6.633±0.00 N/A N/A N/A N/A
ENST00000557508 15.089±0.00 38.446±0.00 N/A 12.163±0.19 17.993±0.00 8.454±0.00 N/A 49.973±0.00 N/A N/A N/A 32.687±0.00 N/A 12.378±0.00
ENSG00000139971 ENST00000267485 0.622±0.00 N/A 1.389±0.00 1.647±0.16 N/A 0.669±0.00 0.984±0.17 N/A 1.344±0.00 0.683±0.00 0.125±0.00 1.950±0.00 0.586±0.25 1.595±0.00
ENST00000334342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.826±0.00 N/A
ENST00000554218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180189 ENST00000557424 0.084±0.00 0.114±0.00 N/A 0.089±0.00 0.089±0.00 0.148±0.13 0.335±0.27 0.091±0.00 0.067±0.00 0.717±0.00 0.528±0.34 0.166±0.11 0.055±0.03 0.062±0.04
ENSG00000252782 ENST00000516973 N/A 2.447±0.00 N/A 0.287±0.00 N/A N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000258658 ENST00000556390 N/A 0.070±0.00 N/A 0.108±0.00 N/A 0.065±0.00 N/A N/A N/A N/A N/A 0.378±0.28 0.155±0.00 0.695±0.44
ENSG00000258682 ENST00000557322 0.203±0.00 1.181±0.00 1.996±0.00 0.463±0.21 0.671±0.28 0.663±0.42 0.546±0.25 0.669±0.00 0.783±0.72 0.379±0.00 N/A 0.623±0.39 0.459±0.00 0.424±0.12
ENSG00000279636 ENST00000623548 N/A N/A N/A N/A N/A 7.850±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000048118 ENSMUST00000046305 0.948±0.21 1.476±0.32 7.793±1.41 4.308±1.80 2.498±0.57 1.127±0.44 1.054±0.13 1.342±0.16 3.249±2.77 3.302±0.74 1.475±0.31 3.316±3.18 3.373±1.71 2.050±1.44
ENSMUST00000125125 1.619±0.00 1.404±0.41 N/A N/A 1.841±0.00 0.862±0.00 N/A N/A N/A N/A N/A 0.902±0.15 N/A N/A
ENSMUST00000134718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135709 N/A N/A N/A 29.986±0.00 N/A N/A N/A N/A N/A N/A N/A 23.804±0.00 8.514±1.15 42.102±0.00
ENSMUSG00000060073 ENSMUST00000071704 27.279±7.17 52.886±10.29 44.762±1.06 21.684±7.46 43.093±8.40 28.855±7.36 9.349±3.85 27.585±7.82 62.697±9.63 32.115±5.32 37.819±7.37 44.551±17.15 43.929±16.81 27.268±8.55
ENSMUST00000160027 2.874±1.03 2.589±0.41 N/A 8.921±3.98 3.178±0.00 2.028±0.48 1.546±0.16 3.110±0.23 3.783±0.44 2.696±0.14 6.595±0.48 2.866±0.52 N/A N/A
ENSMUST00000160683 9.471±1.76 13.471±1.67 58.923±5.95 22.284±14.00 12.979±4.39 7.797±2.63 9.425±0.83 11.315±2.63 32.644±23.00 12.976±2.39 26.470±3.31 18.275±6.59 39.843±16.24 15.566±2.70
ENSMUST00000160864 17.624±4.26 N/A 42.154±0.56 23.155±0.00 91.573±26.01 N/A 16.414±8.79 14.137±6.03 58.635±11.33 13.514±0.16 30.224±6.97 69.519±11.64 54.009±16.56 15.812±0.00
ENSMUST00000161041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162626 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162851 N/A N/A N/A 129.496±0.00 N/A N/A N/A N/A N/A N/A N/A 219.693±0.00 377.487±217.88 161.616±0.00
ENSMUST00000162898 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085622 ENSMUST00000127129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A N/A
ENSMUST00000136690 2.510±1.17 1.641±0.88 N/A 4.854±0.48 2.770±1.32 2.124±0.30 2.262±0.52 3.382±0.50 2.976±2.10 4.063±0.46 1.771±0.55 3.948±3.88 5.529±2.19 4.094±1.07

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