C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CREB3 regulatory factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048249 Crebrf 10090 + 17:26715650-26776635 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000062519 Crebrf-001 26715650-26776635 protein_coding
  ENSMUST00000132972 Crebrf-005 26742984-26758187 retained_intron
  ENSMUST00000142539 Crebrf-002 26715710-26764259 protein_coding
  ENSMUST00000144221 Crebrf-003 26715655-26742959 protein_coding
  ENSMUST00000151681 Crebrf-004 26715724-26762298 protein_coding
  ENSMUST00000176845 Crebrf-006 26757702-26759919 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062519ENSMUST00000132972ENSMUST00000142539ENSMUST00000144221
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062519 1.776±0.57 1.032±0.44 6.002±0.81 1.912±0.44 1.244±0.52 0.590±0.13 1.549±0.31 4.722±2.43 1.291±0.83 3.115±0.42 1.056±0.39 1.916±1.80 1.740±1.08 4.549±2.21
ENSMUST00000132972 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.642±0.00 N/A 27.772±0.00
ENSMUST00000142539 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.952±0.00
ENSMUST00000144221 N/A N/A N/A N/A N/A 0.971±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643
CIL_0008HF CIL_0008HF_0002 VISTA 17:26563571-27166666
CIL_00023T CIL_00023T_0002 CGP 17:26676396-26776635
CIL_00023P CIL_00023P_0002 CGP 17:26715650-26792565

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006810 IEA transport
GO:0006986 IEA response to unfolded protein
GO:0016604 IDA:ISS nuclear body
GO:0032388 ISS positive regulation of intracellular transport
GO:0034976 ISS response to endoplasmic reticulum stress
GO:0042711 IGI maternal behavior
GO:0043565 IEA sequence-specific DNA binding
GO:0045732 ISS positive regulation of protein catabolic process
GO:0051222 ISS positive regulation of protein transport
GO:1900102 ISS negative regulation of endoplasmic reticulum unfolded protein response
GO:1900170 IDA negative regulation of glucocorticoid mediated signaling pathway
GO:1902213 IMP positive regulation of prolactin signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078581 crebrf creb3 regulatory factor protein_coding Danio_rerio
ENSG00000164463 CREBRF CREB3 regulatory factor protein_coding Homo_sapiens

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