C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CREB3 regulatory factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062519 Crebrf-001 ENSMUSG00000048249 10090 + 17:26715650-26776635 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062519 1.776±0.57 1.032±0.44 6.002±0.81 1.912±0.44 1.244±0.52 0.590±0.13 1.549±0.31 4.722±2.43 1.291±0.83 3.115±0.42 1.056±0.39 1.916±1.80 1.740±1.08 4.549±2.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0002 VISTA 17:26208852-26810691
CIL_000915 CIL_000915_0002 VISTA 17:26527896-27128643
CIL_0008HF CIL_0008HF_0002 VISTA 17:26563571-27166666
CIL_00023T CIL_00023T_0002 CGP 17:26676396-26776635
CIL_00023P CIL_00023P_0002 CGP 17:26715650-26792565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003674 ND molecular_function
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005737 ISS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006810 IEA transport
GO:0006986 IEA response to unfolded protein
GO:0016604 IDA:ISS nuclear body
GO:0032388 ISS positive regulation of intracellular transport
GO:0034976 ISS response to endoplasmic reticulum stress
GO:0042711 IGI maternal behavior
GO:0043565 IEA sequence-specific DNA binding
GO:0045732 ISS positive regulation of protein catabolic process
GO:0051222 ISS positive regulation of protein transport
GO:1900102 ISS negative regulation of endoplasmic reticulum unfolded protein response
GO:1900170 IDA negative regulation of glucocorticoid mediated signaling pathway
GO:1902213 IMP positive regulation of prolactin signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296953 CREBRF-001 protein_coding Homo_sapiens 0 4617
ENST00000520420 CREBRF-004 protein_coding Homo_sapiens 0 1814
ENST00000520464 CREBRF-005 retained_intron Homo_sapiens 0 2037
ENST00000522692 CREBRF-003 protein_coding Homo_sapiens 0 1851
ENST00000523161 CREBRF-008 protein_coding Homo_sapiens 0 322

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