C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA E130311K13 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048581 E130311K13Rik 10090 - 3:63914684-63929472 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061706 E130311K13Rik-001 63914684-63929472 protein_coding
  ENSMUST00000160983 E130311K13Rik-003 63926817-63929391 retained_intron
  ENSMUST00000162448 E130311K13Rik-002 63924017-63929391 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061706ENSMUST00000160983ENSMUST00000162448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061706 2.141±0.10 1.133±0.48 3.054±0.28 2.049±0.98 1.260±0.32 0.669±0.22 1.508±0.39 2.188±0.41 1.291±0.30 1.110±0.23 1.450±0.34 2.592±1.94 3.347±1.44 1.092±0.28
ENSMUST00000160983 N/A 3.961±2.04 N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A 3.314±0.00 N/A N/A
ENSMUST00000162448 1.268±0.37 8.172±1.43 N/A N/A 2.783±1.01 1.834±0.94 N/A 1.725±0.98 3.945±0.91 1.844±1.05 N/A 8.381±4.08 N/A 0.364±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SL CIL_0004SL_0003 CGP 3:63696234-63929472
CIL_0004SM CIL_0004SM_0003 CGP 3:63914684-63964768

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005615 ISS extracellular space
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0051090 ISS regulation of sequence-specific DNA binding transcription factor activity
GO:0070373 ISS negative regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000040582 C18H3orf33 chromosome 3 open reading frame 33 protein_coding Danio_rerio
ENSG00000174928 C3orf33 chromosome 3 open reading frame 33 protein_coding Homo_sapiens

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