C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004SL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079253-ENSDARG00000040582 CGP 7955 18:32210066-32384211
GeneTranscriptPositionBiotype
ENSDARG00000040582 (C18H3orf33)
chromosome 3 open reading frame 33 		ENSDART00000059400 (C18H3orf33-001) 32373426-32384184 protein_coding
ENSDART00000141774 (C18H3orf33-002) 32379097-32384211 retained_intron
ENSDARG00000079253 (plch1)
phospholipase C, eta 1 		ENSDART00000079341 (plch1-201) 32210066-32334109 protein_coding
ENSDART00000135965 (plch1-001) 32216960-32290023 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0004SL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000114805-ENSG00000174928 CGP 9606 3:155375580-155806351
GeneTranscriptPositionBiotype
ENSG00000114805 (PLCH1)
phospholipase C, eta 1 		ENST00000334686 (PLCH1-201) 155479882-155704208 protein_coding
ENST00000340059 (PLCH1-004) 155479882-155676039 protein_coding
ENST00000447496 (PLCH1-003) 155479882-155676039 protein_coding
ENST00000460012 (PLCH1-002) 155479881-155745067 protein_coding
ENST00000469040 (PLCH1-005) 155490742-155504572 retained_intron
ENST00000494598 (PLCH1-001) 155375580-155676416 protein_coding
ENSG00000174928 (C3orf33)
chromosome 3 open reading frame 33 		ENST00000340171 (C3orf33-001) 155762617-155806351 protein_coding
ENST00000465810 (C3orf33-004) 155763528-155806259 nonsense_mediated_decay
ENST00000482061 (C3orf33-002) 155762617-155806266 nonsense_mediated_decay
ENST00000486435 (C3orf33-003) 155763787-155806251 nonsense_mediated_decay
ENST00000534941 (C3orf33-201) 155762618-155806272 protein_coding
ENSG00000214919 (RP11-674E16.4)
 ENST00000399242 (RP11-674E16.4-001) 155742142-155743726 sense_intronic
ENSG00000239212 (RPL6P7)
ribosomal protein L6 pseudogene 7 		ENST00000488873 (RPL6P7-001) 155657760-155658612 processed_pseudogene
ENSG00000239508 (PLCH1-AS1)
PLCH1 antisense RNA 1 		ENST00000475196 (PLCH1-AS1-001) 155449184-155457753 antisense
ENSG00000241307 (RP11-674E16.1)
 ENST00000469035 (RP11-674E16.1-001) 155760617-155761217 processed_pseudogene
ENSG00000242152 (RP11-639F1.3)
 ENST00000487812 (RP11-639F1.3-001) 155431229-155433398 processed_pseudogene
ENSG00000242925 (PLCH1-AS2)
PLCH1 antisense RNA 2 		ENST00000472913 (PLCH1-AS2-001) 155485803-155487121 antisense
ENSG00000243518 (RP11-639F1.2)
 ENST00000476543 (RP11-639F1.2-001) 155401329-155403399 processed_pseudogene
ENSG00000272096 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000606972 (Metazoa_SRP.1-229) 155437538-155437823 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0004SL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000036834-ENSMUSG00000048581 CGP 10090 3:63696234-63929472
GeneTranscriptPositionBiotype
ENSMUSG00000036834 (Plch1)
phospholipase C, eta 1 		ENSMUST00000048134 (Plch1-001) 63696234-63851039 protein_coding
ENSMUST00000059973 (Plch1-010) 63696238-63850991 protein_coding
ENSMUST00000084105 (Plch1-004) 63696237-63850991 protein_coding
ENSMUST00000159188 (Plch1-008) 63781377-63899442 protein_coding
ENSMUST00000159374 (Plch1-006) 63696237-63702354 retained_intron
ENSMUST00000159676 (Plch1-009) 63696237-63851283 protein_coding
ENSMUST00000159982 (Plch1-005) 63696237-63740865 retained_intron
ENSMUST00000160638 (Plch1-201) 63696234-63850991 protein_coding
ENSMUST00000161052 (Plch1-011) 63869450-63899373 protein_coding
ENSMUST00000162269 (Plch1-002) 63696237-63851257 protein_coding
ENSMUST00000175947 (Plch1-012) 63701816-63851359 protein_coding
ENSMUST00000176861 (Plch1-013) 63698933-63702043 protein_coding
ENSMUST00000177143 (Plch1-007) 63696731-63899472 protein_coding
ENSMUSG00000048581 (E130311K13Rik)
RIKEN cDNA E130311K13 gene 		ENSMUST00000061706 (E130311K13Rik-001) 63914684-63929472 protein_coding
ENSMUST00000160983 (E130311K13Rik-003) 63926817-63929391 retained_intron
ENSMUST00000162448 (E130311K13Rik-002) 63924017-63929391 processed_transcript
ENSMUSG00000085290 (Gm16129)
predicted gene 16129 		ENSMUST00000152628 (Gm16129-001) 63843116-63844069 processed_pseudogene
ENSMUSG00000090131 (Gm16162)
predicted gene 16162 		ENSMUST00000162296 (Gm16162-001) 63825794-63826444 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SL_0001ENSDARG00000040582ENSDART00000059400ENSDART00000141774ENSDARG00000079253ENSDART00000079341ENSDART00000135965CIL_0004SL_0002ENSG00000114805ENST00000334686ENST00000340059ENST00000447496ENST00000460012ENST00000469040ENST00000494598ENSG00000174928ENST00000340171ENST00000465810ENST00000482061ENST00000486435ENST00000534941ENSG00000214919ENST00000399242ENSG00000239212ENST00000488873ENSG00000239508ENST00000475196ENSG00000241307ENST00000469035ENSG00000242152ENST00000487812ENSG00000242925ENST00000472913ENSG00000243518ENST00000476543ENSG00000272096ENST00000606972CIL_0004SL_0003ENSMUSG00000036834ENSMUST00000048134ENSMUST00000059973ENSMUST00000084105ENSMUST00000159188ENSMUST00000159374ENSMUST00000159676ENSMUST00000159982ENSMUST00000160638ENSMUST00000161052ENSMUST00000162269ENSMUST00000175947ENSMUST00000176861ENSMUST00000177143ENSMUSG00000048581ENSMUST00000061706ENSMUST00000160983ENSMUST00000162448ENSMUSG00000085290ENSMUST00000152628ENSMUSG00000090131ENSMUST00000162296
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004SL_0001ENSDARG00000040582ENSDART00000059400ENSDARG00000079253ENSDART00000079341ENSDART00000135965CIL_0004SL_0002ENSG00000114805ENST00000334686ENST00000340059ENST00000447496ENST00000460012ENST00000469040ENST00000494598ENSG00000174928ENST00000340171ENST00000465810ENST00000482061ENST00000486435ENST00000534941ENSG00000214919ENST00000399242ENSG00000239212ENST00000488873ENSG00000239508ENST00000475196ENSG00000241307ENST00000469035ENSG00000242152ENST00000487812ENSG00000242925ENST00000472913ENSG00000243518ENST00000476543ENSG00000272096ENST00000606972CIL_0004SL_0003ENSMUSG00000036834ENSMUST00000048134ENSMUST00000059973ENSMUST00000084105ENSMUST00000159188ENSMUST00000159374ENSMUST00000159982ENSMUST00000160638ENSMUST00000162269ENSMUST00000175947ENSMUST00000176861ENSMUST00000177143ENSMUSG00000048581ENSMUST00000061706ENSMUST00000160983ENSMUST00000162448ENSMUSG00000085290ENSMUST00000152628ENSMUSG00000090131ENSMUST00000162296
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040582 ENSDART00000059400 N/A N/A N/A 1.717±0.64 N/A N/A 0.843±0.40 1.152±0.21 0.037±0.00 N/A 0.149±0.00 N/A N/A N/A
ENSDART00000141774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079253 ENSDART00000079341 N/A N/A N/A N/A N/A N/A 0.012±0.01 0.142±0.12 0.030±0.00 N/A N/A N/A N/A N/A
ENSDART00000135965 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000114805 ENST00000334686 0.004±0.00 0.018±0.00 N/A N/A 0.151±0.00 0.038±0.00 0.034±0.00 0.070±0.06 0.068±0.06 0.848±0.00 0.056±0.00 0.209±0.13 0.096±0.05 5.921±2.97
ENST00000340059 N/A N/A N/A 0.694±0.00 N/A N/A 0.074±0.03 0.008±0.00 N/A N/A N/A N/A N/A 0.606±0.00
ENST00000447496 N/A N/A N/A 0.789±0.44 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460012 N/A N/A 0.066±0.00 0.244±0.00 0.141±0.00 0.344±0.16 N/A 0.414±0.00 0.153±0.00 N/A N/A 0.351±0.21 0.068±0.00 0.448±0.00
ENST00000469040 N/A N/A N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A 0.191±0.00 N/A 0.097±0.00 N/A
ENST00000494598 0.003±0.00 N/A N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A 0.018±0.00 N/A
ENSG00000174928 ENST00000340171 N/A N/A N/A 0.955±0.00 N/A N/A N/A N/A 0.194±0.00 N/A N/A 0.566±0.04 N/A 2.502±1.14
ENST00000465810 N/A N/A 1.977±0.00 0.688±0.00 0.286±0.00 0.351±0.00 N/A 0.162±0.00 0.458±0.00 0.381±0.00 0.401±0.00 0.213±0.00 0.217±0.00 N/A
ENST00000482061 N/A N/A N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A N/A N/A N/A
ENST00000486435 N/A N/A N/A N/A N/A N/A N/A N/A 0.119±0.00 N/A N/A 0.742±0.00 N/A 3.928±0.00
ENST00000534941 0.446±0.00 0.606±0.00 N/A 0.930±0.00 0.675±0.28 0.465±0.04 0.961±0.61 2.101±0.00 0.551±0.00 0.635±0.00 0.810±0.00 0.934±0.57 0.779±0.35 1.480±0.00
ENSG00000214919 ENST00000399242 0.035±0.00 0.195±0.00 0.221±0.00 0.073±0.01 0.101±0.00 0.023±0.00 0.025±0.00 0.057±0.00 0.039±0.00 0.197±0.12 N/A 0.077±0.06 N/A 0.182±0.02
ENSG00000239212 ENST00000488873 N/A N/A 0.154±0.00 0.075±0.00 0.132±0.05 0.188±0.14 N/A N/A 0.149±0.00 N/A N/A 0.187±0.13 N/A 0.117±0.00
ENSG00000239508 ENST00000475196 N/A N/A N/A 0.067±0.00 0.020±0.00 0.092±0.00 N/A N/A N/A 0.266±0.00 N/A 0.064±0.00 N/A 0.066±0.00
ENSG00000241307 ENST00000469035 N/A 0.021±0.00 N/A 0.603±0.00 0.104±0.00 0.650±0.00 0.133±0.00 0.041±0.00 0.168±0.15 0.055±0.00 1.509±0.00 0.624±0.00 0.089±0.00 0.038±0.00
ENSG00000242152 ENST00000487812 N/A N/A N/A 0.035±0.00 N/A 0.268±0.00 N/A N/A 0.170±0.00 N/A N/A N/A N/A N/A
ENSG00000242925 ENST00000472913 N/A 0.068±0.00 N/A N/A 0.182±0.00 N/A N/A N/A N/A N/A N/A 0.076±0.00 N/A 0.731±0.10
ENSG00000243518 ENST00000476543 N/A N/A N/A 0.033±0.00 0.024±0.00 0.023±0.00 N/A 0.076±0.00 N/A 0.007±0.00 N/A 0.020±0.00 N/A N/A
ENSG00000272096 ENST00000606972 N/A N/A N/A N/A N/A N/A N/A 1.079±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036834 ENSMUST00000048134 N/A N/A N/A N/A N/A N/A 0.023±0.00 0.217±0.00 0.038±0.01 0.234±0.07 N/A 0.682±0.46 0.056±0.00 0.142±0.00
ENSMUST00000059973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.348±0.06 0.055±0.00 N/A
ENSMUST00000084105 N/A N/A 0.032±0.00 1.364±0.33 N/A 0.506±0.00 N/A N/A 0.013±0.00 N/A N/A 0.246±0.04 0.100±0.07 N/A
ENSMUST00000159188 1.035±0.00 N/A 0.197±0.00 N/A N/A 2.211±0.00 N/A N/A N/A 1.203±0.24 0.060±0.00 2.026±0.21 0.121±0.06 N/A
ENSMUST00000159374 N/A N/A N/A 2.252±0.00 0.181±0.00 0.928±0.23 0.051±0.00 0.100±0.00 0.040±0.00 0.209±0.06 0.009±0.00 1.035±0.00 N/A 0.079±0.00
ENSMUST00000159676 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159982 0.438±0.05 N/A N/A N/A 0.043±0.00 N/A 0.071±0.00 0.189±0.09 0.024±0.00 N/A 0.008±0.00 0.374±0.16 0.221±0.17 0.012±0.00
ENSMUST00000160638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.434±0.27 N/A N/A
ENSMUST00000161052 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162269 N/A N/A 0.018±0.00 1.182±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175947 0.020±0.00 N/A N/A N/A 0.051±0.05 N/A 0.010±0.00 N/A N/A N/A 0.012±0.00 N/A N/A 0.100±0.03
ENSMUST00000176861 N/A N/A N/A N/A 0.170±0.00 N/A N/A N/A 0.078±0.00 N/A 0.136±0.00 N/A 0.059±0.00 N/A
ENSMUST00000177143 0.294±0.03 N/A N/A 1.141±0.36 0.030±0.01 1.738±0.51 N/A 0.270±0.07 0.029±0.00 0.078±0.00 N/A 0.707±0.26 0.115±0.07 0.069±0.00
ENSMUSG00000048581 ENSMUST00000061706 2.141±0.10 1.133±0.48 3.054±0.28 2.049±0.98 1.260±0.32 0.669±0.22 1.508±0.39 2.188±0.41 1.291±0.30 1.110±0.23 1.450±0.34 2.592±1.94 3.347±1.44 1.092±0.28
ENSMUST00000160983 N/A 3.961±2.04 N/A N/A N/A N/A N/A N/A N/A 0.525±0.00 N/A 3.314±0.00 N/A N/A
ENSMUST00000162448 1.268±0.37 8.172±1.43 N/A N/A 2.783±1.01 1.834±0.94 N/A 1.725±0.98 3.945±0.91 1.844±1.05 N/A 8.381±4.08 N/A 0.364±0.00
ENSMUSG00000085290 ENSMUST00000152628 N/A N/A N/A N/A N/A 0.368±0.00 N/A N/A N/A N/A N/A 0.082±0.00 N/A 0.080±0.00
ENSMUSG00000090131 ENSMUST00000162296 N/A N/A N/A 0.285±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.440±0.00

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