C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA E130311K13 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061706 E130311K13Rik-001 ENSMUSG00000048581 10090 - 3:63914684-63929472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061706
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061706 2.141±0.10 1.133±0.48 3.054±0.28 2.049±0.98 1.260±0.32 0.669±0.22 1.508±0.39 2.188±0.41 1.291±0.30 1.110±0.23 1.450±0.34 2.592±1.94 3.347±1.44 1.092±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004SL CIL_0004SL_0003 CGP 3:63696234-63929472
CIL_0004SM CIL_0004SM_0003 CGP 3:63914684-63964768

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0005615 ISS extracellular space
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016788 IEA hydrolase activity, acting on ester bonds
GO:0051090 ISS regulation of sequence-specific DNA binding transcription factor activity
GO:0070373 ISS negative regulation of ERK1 and ERK2 cascade

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340171 C3orf33-001 protein_coding Homo_sapiens 0 717
ENST00000465810 C3orf33-004 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000482061 C3orf33-002 nonsense_mediated_decay Homo_sapiens 0 649
ENST00000486435 C3orf33-003 nonsense_mediated_decay Homo_sapiens 0 516
ENST00000534941 C3orf33-201 protein_coding Homo_sapiens 0 717

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