C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ephrin A5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076840 Efna5-001 ENSMUSG00000048915 10090 - 17:62604184-62881317 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076840
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076840 0.924±0.15 1.716±0.28 4.121±3.12 1.686±0.00 0.485±0.13 0.586±0.23 0.403±0.22 0.516±0.13 0.046±0.02 1.249±0.50 0.325±0.24 0.115±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000760 CIL_000760_0002 CGP 17:58999618-62881317
CIL_0008LI CIL_0008LI_0002 VISTA 17:62400976-63001852
CIL_0008LC CIL_0008LC_0002 VISTA 17:62485705-63087128
CIL_0004Z5 CIL_0004Z5_0002 CGP 17:62604184-63500017

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007411 IMP axon guidance
GO:0022407 IDA regulation of cell-cell adhesion
GO:0031290 IDA retinal ganglion cell axon guidance
GO:0031362 ISS anchored component of external side of plasma membrane
GO:0032314 IDA regulation of Rac GTPase activity
GO:0032319 ISS regulation of Rho GTPase activity
GO:0032956 IDA regulation of actin cytoskeleton organization
GO:0045499 IDA chemorepellent activity
GO:0046658 IBA anchored component of plasma membrane
GO:0046875 IPI ephrin receptor binding
GO:0048013 IDA ephrin receptor signaling pathway
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0050919 IDA negative chemotaxis
GO:0051893 ISS regulation of focal adhesion assembly
GO:0061178 IMP regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0070507 ISS regulation of microtubule cytoskeleton organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333274 EFNA5-001 protein_coding Homo_sapiens 0 1764
ENST00000504941 EFNA5-002 retained_intron Homo_sapiens 0 821
ENST00000505499 EFNA5-005 processed_transcript Homo_sapiens 0 472
ENST00000509503 EFNA5-003 protein_coding Homo_sapiens 0 808
ENST00000510359 EFNA5-004 processed_transcript Homo_sapiens 0 713
ENST00000611503 EFNA5-201 protein_coding Homo_sapiens 0 1764

Loading