C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170695 Pcdh10-202 ENSMUSG00000049100 10090 + 3:45378398-45423711 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000170695
Transcript ID Adipose Bladder Brain Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000170695 0.039±0.00 0.015±0.00 7.039±2.55 0.013±0.00 0.035±0.00 0.018±0.01 0.006±0.00 0.068±0.07 0.111±0.03 0.058±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001L CIL_00001L_0002 CGP 3:41742611-45434566
CIL_00001S CIL_00001S_0002 CGP 3:45378398-46447941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0007155 IDA cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052444 pcdh10b-201 protein_coding Danio_rerio 0 420
ENSDART00000105494 pcdh10a-202 protein_coding Danio_rerio 0 375
ENSDART00000076443 pcdh10a-201 protein_coding Danio_rerio 0 375
ENSDART00000019005 PCDH10-201 protein_coding Danio_rerio 0.000000000009 79
ENST00000264360 PCDH10-001 protein_coding Homo_sapiens 0 6133
ENST00000511112 PCDH10-002 retained_intron Homo_sapiens 0 579
ENST00000618019 PCDH10-003 protein_coding Homo_sapiens 0 3862

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