C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171554 Pcdh10-203 ENSMUSG00000049100 10090 + 3:45378398-45399594 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171554 0.141±0.00 1.573±0.29 0.052±0.02 14.445±5.75 0.044±0.02 0.205±0.07 0.013±0.01 0.039±0.03 0.013±0.01 0.020±0.01 0.013±0.00 0.229±0.06 0.081±0.07 0.277±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001L CIL_00001L_0002 CGP 3:41742611-45434566
CIL_00001S CIL_00001S_0002 CGP 3:45378398-46447941

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005887 ISS integral component of plasma membrane
GO:0007155 IDA cell adhesion
GO:0007156 IDA homophilic cell adhesion via plasma membrane adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000052444 pcdh10b-201 protein_coding Danio_rerio 0 420
ENSDART00000105494 pcdh10a-202 protein_coding Danio_rerio 0 375
ENSDART00000076443 pcdh10a-201 protein_coding Danio_rerio 0 375
ENSDART00000019005 PCDH10-201 protein_coding Danio_rerio 0.000000000008 79
ENST00000264360 PCDH10-001 protein_coding Homo_sapiens 0 4540
ENST00000511112 PCDH10-002 retained_intron Homo_sapiens 0 580
ENST00000618019 PCDH10-003 protein_coding Homo_sapiens 0 3862

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