C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sterile alpha and HEAT/Armadillo motif containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050132 Sarm1 10090 - 11:78472330-78497754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061174 Sarm1-001 78473291-78497754 protein_coding
  ENSMUST00000108287 Sarm1-002 78472330-78497458 protein_coding
  ENSMUST00000130955 Sarm1-004 78490955-78497686 processed_transcript
  ENSMUST00000153534 Sarm1-003 78473213-78483798 retained_intron
  ENSMUST00000170674 Sarm1-005 78482834-78487295 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061174ENSMUST00000108287ENSMUST00000130955ENSMUST00000153534ENSMUST00000170674
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061174 0.342±0.16 0.603±0.32 0.171±0.00 9.748±4.78 0.313±0.15 0.206±0.03 0.053±0.00 0.074±0.03 0.049±0.03 0.175±0.07 0.051±0.03 0.503±0.23 0.042±0.00 0.046±0.00
ENSMUST00000108287 N/A 0.261±0.11 0.122±0.05 1.352±0.00 0.110±0.00 0.086±0.05 N/A 0.045±0.01 0.045±0.03 N/A 0.032±0.01 0.127±0.07 0.073±0.00 0.147±0.00
ENSMUST00000130955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A
ENSMUST00000153534 0.135±0.04 N/A N/A N/A 0.269±0.04 N/A 0.088±0.01 0.083±0.04 0.085±0.04 N/A 0.086±0.04 0.221±0.02 0.608±0.73 0.929±0.03
ENSMUST00000170674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LU CIL_0003LU_0002 CGP 11:78465697-78497754
CIL_0000FM CIL_0000FM_0003 CGP 11:78472330-78502324

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005874 IDA microtubule
GO:0007165 IEA signal transduction
GO:0009749 IMP response to glucose
GO:0015630 IDA microtubule cytoskeleton
GO:0030054 IEA cell junction
GO:0030425 IMP dendrite
GO:0031315 IDA extrinsic component of mitochondrial outer membrane
GO:0042981 IMP regulation of apoptotic process
GO:0045087 IEA innate immune response
GO:0045202 IDA synapse
GO:0048814 IMP regulation of dendrite morphogenesis
GO:1901214 IMP regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010610 sarm1 sterile alpha and TIR motif containing 1 protein_coding Danio_rerio
ENSG00000004139 SARM1 sterile alpha and TIR motif containing 1 protein_coding Homo_sapiens

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