C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000FM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000010610-ENSDARG00000055388 CGP 7955 15:27537246-27557810
GeneTranscriptPositionBiotype
ENSDARG00000010610 (sarm1)
sterile alpha and TIR motif containing 1 		ENSDART00000004200 (sarm1-001) 27537246-27548933 protein_coding
ENSDARG00000055388 (vtna)
vitronectin a 		ENSDART00000077736 (vtna-001) 27551054-27557810 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000FM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000004139-ENSG00000004139 CGP 9606 17:28364356-28404049
GeneTranscriptPositionBiotype
ENSG00000109072 (VTN)
vitronectin 		ENST00000226218 (VTN-001) 28367276-28370822 protein_coding
ENST00000539746 (VTN-004) 28367868-28368937 retained_intron
ENST00000542029 (VTN-003) 28369682-28373091 protein_coding
ENSG00000277450 (CTB-96E2.10)
 ENST00000613598 (CTB-96E2.10-001) 28373256-28373562 sense_intronic
ENSG00000279532 (CTB-96E2.6)
 ENST00000623773 (CTB-96E2.6-001) 28373673-28374301 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_0000FM_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050132-ENSMUSG00000017344 CGP 10090 11:78472330-78502324
GeneTranscriptPositionBiotype
ENSMUSG00000017344 (Vtn)
vitronectin 		ENSMUST00000017488 (Vtn-001) 78499120-78502324 protein_coding
ENSMUST00000128479 (Vtn-002) 78499091-78500585 retained_intron
ENSMUST00000146997 (Vtn-003) 78499172-78500244 retained_intron
ENSMUST00000153628 (Vtn-004) 78500606-78502222 retained_intron
ENSMUSG00000050132 (Sarm1)
sterile alpha and HEAT/Armadillo motif containing 1 		ENSMUST00000061174 (Sarm1-001) 78473291-78497754 protein_coding
ENSMUST00000108287 (Sarm1-002) 78472330-78497458 protein_coding
ENSMUST00000130955 (Sarm1-004) 78490955-78497686 processed_transcript
ENSMUST00000153534 (Sarm1-003) 78473213-78483798 retained_intron
ENSMUST00000170674 (Sarm1-005) 78482834-78487295 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FM_0001ENSDARG00000010610ENSDART00000004200ENSDARG00000055388ENSDART00000077736CIL_0000FM_0002ENSG00000109072ENST00000226218ENST00000539746ENST00000542029ENSG00000277450ENST00000613598ENSG00000279532ENST00000623773CIL_0000FM_0003ENSMUSG00000017344ENSMUST00000017488ENSMUST00000128479ENSMUST00000146997ENSMUST00000153628ENSMUSG00000050132ENSMUST00000061174ENSMUST00000108287ENSMUST00000130955ENSMUST00000153534ENSMUST00000170674
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FM_0001ENSDARG00000010610ENSDART00000004200ENSDARG00000055388ENSDART00000077736CIL_0000FM_0002ENSG00000109072ENST00000226218ENST00000542029ENSG00000277450ENST00000613598ENSG00000279532ENST00000623773CIL_0000FM_0003ENSMUSG00000017344ENSMUST00000017488ENSMUST00000128479ENSMUST00000146997ENSMUST00000153628ENSMUSG00000050132ENSMUST00000061174ENSMUST00000108287ENSMUST00000130955ENSMUST00000153534ENSMUST00000170674
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010610 ENSDART00000004200 N/A N/A N/A 6.154±1.58 N/A N/A 0.095±0.09 1.378±0.63 0.083±0.00 N/A 0.433±0.00 N/A N/A N/A
ENSDARG00000055388 ENSDART00000077736 N/A N/A N/A 0.888±0.33 N/A N/A 0.486±0.16 30.478±12.40 17.518±0.00 N/A 0.683±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109072 ENST00000226218 N/A N/A N/A N/A 2.422±0.00 N/A 10.513±9.09 303.476±0.00 N/A N/A N/A 9.793±0.00 N/A 7.286±0.00
ENST00000539746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542029 N/A N/A N/A N/A N/A N/A 3.568±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000277450 ENST00000613598 N/A 0.053±0.00 2.278±0.00 0.584±0.47 0.107±0.00 1.056±0.00 N/A N/A 0.214±0.17 N/A N/A 1.332±1.43 0.324±0.00 0.535±0.11
ENSG00000279532 ENST00000623773 0.527±0.00 1.052±0.00 N/A 0.420±0.19 1.139±0.59 0.219±0.00 0.165±0.00 0.355±0.00 0.386±0.11 0.544±0.21 0.126±0.00 0.350±0.24 0.249±0.00 0.258±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000017344 ENSMUST00000017488 10.546±2.67 1.130±0.32 1.447±0.03 24.955±7.58 15.916±1.88 1.905±0.69 15.829±1.38 1.121±0.44 982.967±518.44 11.959±0.51 7.488±1.57 2.652±1.30 13.116±14.90 0.319±0.08
ENSMUST00000128479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.483±0.22 N/A
ENSMUST00000146997 N/A 0.607±0.24 N/A N/A N/A N/A N/A 0.571±0.00 N/A N/A N/A 3.335±0.79 N/A 0.247±0.00
ENSMUST00000153628 N/A N/A N/A 8.706±0.00 6.052±0.00 1.389±0.00 5.733±0.00 0.984±0.40 N/A N/A N/A 1.653±0.35 N/A 0.232±0.10
ENSMUSG00000050132 ENSMUST00000061174 0.342±0.16 0.603±0.32 0.171±0.00 9.748±4.78 0.313±0.15 0.206±0.03 0.053±0.00 0.074±0.03 0.049±0.03 0.175±0.07 0.051±0.03 0.503±0.23 0.042±0.00 0.046±0.00
ENSMUST00000108287 N/A 0.261±0.11 0.122±0.05 1.352±0.00 0.110±0.00 0.086±0.05 N/A 0.045±0.01 0.045±0.03 N/A 0.032±0.01 0.127±0.07 0.073±0.00 0.147±0.00
ENSMUST00000130955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00 N/A N/A N/A
ENSMUST00000153534 0.135±0.04 N/A N/A N/A 0.269±0.04 N/A 0.088±0.01 0.083±0.04 0.085±0.04 N/A 0.086±0.04 0.221±0.02 0.608±0.73 0.929±0.03
ENSMUST00000170674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.231±0.00 N/A N/A N/A

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