C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha and HEAT/Armadillo motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061174 Sarm1-001 ENSMUSG00000050132 10090 - 11:78473291-78497754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061174
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061174 0.342±0.16 0.603±0.32 0.171±0.00 9.748±4.78 0.313±0.15 0.206±0.03 0.053±0.00 0.074±0.03 0.049±0.03 0.175±0.07 0.051±0.03 0.503±0.23 0.042±0.00 0.046±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LU CIL_0003LU_0002 CGP 11:78465697-78497754
CIL_0000FM CIL_0000FM_0003 CGP 11:78472330-78502324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005874 IDA microtubule
GO:0007165 IEA signal transduction
GO:0009749 IMP response to glucose
GO:0015630 IDA microtubule cytoskeleton
GO:0030054 IEA cell junction
GO:0030425 IMP dendrite
GO:0031315 IDA extrinsic component of mitochondrial outer membrane
GO:0042981 IMP regulation of apoptotic process
GO:0045087 IEA innate immune response
GO:0045202 IDA synapse
GO:0048814 IMP regulation of dendrite morphogenesis
GO:1901214 IMP regulation of neuron death

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000004200 sarm1-001 protein_coding Danio_rerio 9e-34 150
ENST00000379061 SARM1-002 processed_transcript Homo_sapiens 0 2004
ENST00000577870 SARM1-008 retained_intron Homo_sapiens 0 427
ENST00000578128 SARM1-007 protein_coding Homo_sapiens 0 665
ENST00000579593 SARM1-009 protein_coding Homo_sapiens 0 379
ENST00000580711 SARM1-006 retained_intron Homo_sapiens 0 396
ENST00000582323 SARM1-005 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000585453 SARM1-003 retained_intron Homo_sapiens 0 1086
ENST00000585482 SARM1-001 protein_coding Homo_sapiens 0 2665
ENST00000612814 SLC46A1-001 protein_coding Homo_sapiens 8.99998e-41 174
ENST00000618626 SLC46A1-002 protein_coding Homo_sapiens 7.00005e-41 174

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