C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sterile alpha and HEAT/Armadillo motif containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153534 Sarm1-003 ENSMUSG00000050132 10090 - 11:78473213-78483798 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000153534
Transcript ID Adipose Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000153534 0.135±0.04 0.269±0.04 0.088±0.01 0.083±0.04 0.085±0.04 0.086±0.04 0.221±0.02 0.608±0.73 0.929±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LU CIL_0003LU_0002 CGP 11:78465697-78497754
CIL_0000FM CIL_0000FM_0003 CGP 11:78472330-78502324

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000004200 sarm1-001 protein_coding Danio_rerio 6e-34 150
ENST00000379061 SARM1-002 processed_transcript Homo_sapiens 0 566
ENST00000577870 SARM1-008 retained_intron Homo_sapiens 0 427
ENST00000578128 SARM1-007 protein_coding Homo_sapiens 0 667
ENST00000579593 SARM1-009 protein_coding Homo_sapiens 0 379
ENST00000580711 SARM1-006 retained_intron Homo_sapiens 0 398
ENST00000585453 SARM1-003 retained_intron Homo_sapiens 0 665
ENST00000585482 SARM1-001 protein_coding Homo_sapiens 0 665
ENST00000612814 SLC46A1-001 protein_coding Homo_sapiens 8.99998e-41 174
ENST00000618626 SLC46A1-002 protein_coding Homo_sapiens 7.00005e-41 174

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