C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATP-binding cassette, sub-family A (ABC1), member 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050296 Abca12 10090 - 1:71242276-71414910 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000087268 Abca12-001 71242276-71414910 protein_coding
  ENSMUST00000187097 Abca12-004 71312166-71414910 retained_intron
  ENSMUST00000188752 Abca12-005 71290013-71307087 retained_intron
  ENSMUST00000189102 Abca12-002 71361743-71414896 retained_intron
  ENSMUST00000191520 Abca12-003 71332618-71335786 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000087268ENSMUST00000187097ENSMUST00000188752ENSMUST00000189102ENSMUST00000191520
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087268 N/A 0.042±0.01 0.216±0.13 0.934±0.19 0.407±0.08 0.001±0.00 0.649±0.64 0.022±0.00 0.013±0.00 0.063±0.07 0.100±0.02
ENSMUST00000187097 N/A N/A 0.035±0.01 N/A N/A 0.001±0.00 N/A N/A 0.006±0.00 N/A N/A
ENSMUST00000188752 N/A N/A 0.057±0.00 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A
ENSMUST00000189102 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A
ENSMUST00000191520 0.017±0.01 N/A 0.121±0.00 N/A N/A 0.038±0.01 0.057±0.00 N/A 0.082±0.07 0.004±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AP CIL_0000AP_0003 CGP 1:71027498-71414910
CIL_0005MH CIL_0005MH_0002 CGP 1:71242276-71579631

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005319 IEA lipid transporter activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005743 IDA mitochondrial inner membrane
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0010875 IGI positive regulation of cholesterol efflux
GO:0016887 IEA ATPase activity
GO:0030216 IMP keratinocyte differentiation
GO:0031424 IMP keratinization
GO:0032940 IEA secretion by cell
GO:0033700 IEA phospholipid efflux
GO:0034191 IEA apolipoprotein A-I receptor binding
GO:0035627 IMP ceramide transport
GO:0043129 IMP surfactant homeostasis
GO:0045055 IEA regulated secretory pathway
GO:0048286 IMP lung alveolus development
GO:0055088 IMP lipid homeostasis
GO:0061436 IMP establishment of skin barrier
GO:0072659 IEA protein localization to plasma membrane
GO:0097209 IEA epidermal lamellar body
GO:2000010 IMP positive regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074749 abca12 ATP-binding cassette, sub-family A (ABC1), member 12 protein_coding Danio_rerio
ENSG00000144452 ABCA12 ATP-binding cassette, sub-family A (ABC1), member 12 protein_coding Homo_sapiens

Loading