C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087268 Abca12-001 ENSMUSG00000050296 10090 - 1:71242276-71414910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000087268
Transcript ID Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087268 0.042±0.01 0.216±0.13 0.934±0.19 0.407±0.08 0.001±0.00 0.649±0.64 0.022±0.00 0.013±0.00 0.063±0.07 0.100±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AP CIL_0000AP_0003 CGP 1:71027498-71414910
CIL_0005MH CIL_0005MH_0002 CGP 1:71242276-71579631

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005319 IEA lipid transporter activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005743 IDA mitochondrial inner membrane
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006200 IEA ATP catabolic process
GO:0010875 IGI positive regulation of cholesterol efflux
GO:0016887 IEA ATPase activity
GO:0030216 IMP keratinocyte differentiation
GO:0031424 IMP keratinization
GO:0032940 IEA secretion by cell
GO:0033700 IEA phospholipid efflux
GO:0034191 IEA apolipoprotein A-I receptor binding
GO:0035627 IMP ceramide transport
GO:0043129 IMP surfactant homeostasis
GO:0045055 IEA regulated secretory pathway
GO:0048286 IMP lung alveolus development
GO:0055088 IMP lipid homeostasis
GO:0061436 IMP establishment of skin barrier
GO:0072659 IEA protein localization to plasma membrane
GO:0097209 IEA epidermal lamellar body
GO:2000010 IMP positive regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000272895 ABCA12-001 protein_coding Homo_sapiens 0 8495
ENST00000389661 ABCA12-002 protein_coding Homo_sapiens 0 7463
ENST00000412081 ABCA12-003 protein_coding Homo_sapiens 0 309

Loading