C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: von Willebrand factor C domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050830 Vwc2 10090 + 11:11114223-11268931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056344 Vwc2-201 11115851-11266638 protein_coding
  ENSMUST00000109681 Vwc2-001 11114223-11263526 protein_coding
  ENSMUST00000129670 Vwc2-002 11114744-11268931 nonsense_mediated_decay
  ENSMUST00000154155 Vwc2-003 11116485-11131183 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056344ENSMUST00000109681ENSMUST00000129670ENSMUST00000154155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056344 0.180±0.06 0.376±0.27 1.617±0.00 3.653±1.39 0.072±0.05 0.135±0.09 0.544±0.06 0.033±0.01 0.045±0.05 0.179±0.05 0.081±0.05 0.351±0.13 0.125±0.03 0.113±0.00
ENSMUST00000109681 0.092±0.02 0.229±0.10 N/A 0.242±0.06 0.034±0.01 0.094±0.00 0.054±0.02 0.027±0.01 0.010±0.00 0.029±0.00 0.014±0.00 0.110±0.07 N/A 0.049±0.02
ENSMUST00000129670 0.025±0.00 N/A N/A 0.492±0.00 0.021±0.00 N/A N/A 0.024±0.01 0.006±0.00 0.036±0.00 N/A 0.013±0.00 N/A 0.058±0.02
ENSMUST00000154155 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.176±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S3 CIL_0000S3_0002 CGP 11:9191942-11268931
CIL_0006LI CIL_0006LI_0002 CGP 11:11114223-11462408

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005604 IDA basement membrane
GO:0005614 IDA interstitial matrix
GO:0005615 IDA extracellular space
GO:0010811 IDA positive regulation of cell-substrate adhesion
GO:0030054 IEA cell junction
GO:0030514 IDA negative regulation of BMP signaling pathway
GO:0031012 IDA extracellular matrix
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0045666 IDA positive regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076495 vwc2 von Willebrand factor C domain containing 2 protein_coding Danio_rerio
ENSG00000188730 VWC2 von Willebrand factor C domain containing 2 protein_coding Homo_sapiens

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