C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000149154 Pcdh19-001 ENSMUSG00000051323 10090 - X:133582876-133688987 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLungMuscleOvaryPlacentaENSMUST00000149154
Transcript ID Bladder Brain Breast Lung Muscle Ovary Placenta
ENSMUST00000149154 0.111±0.05 0.800±0.15 0.543±0.10 0.611±0.00 0.089±0.00 0.177±0.00 0.085±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000YN CIL_0000YN_0003 CGP X:133582863-133865577

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255531 PCDH19-001 protein_coding Homo_sapiens 0 3539
ENST00000373034 PCDH19-002 protein_coding Homo_sapiens 0 7221
ENST00000420881 PCDH19-004 protein_coding Homo_sapiens 0 3524
ENST00000464981 PCDH19-003 nonsense_mediated_decay Homo_sapiens 0 355

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